Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2415 CTTTTGAAGCCTCTTCCAAGAGTCTCTTACTCAAGATTTGCCTCGGGTTCATTCTCTCAAGCTTCTGTTGAGTTCTTCTTCCCTCTTAGCTCAAAGGGTAACACCCTTCCTTTGACTCAATTGGAATCTTGTATATTTGAGTTCATGGATAACTCAAATGATTCATCATCATCCTTGAGTTTTGTATCATCTCACCTGTCACATGGTTCTAGTAATCACAACGTGTCTTCCTCCACCAGCAATGAGCATGGGGCAAATACTGAAATTTTGAGCCTGAATAAGCTCAGTGGAAGCCTTGAGAAGCTATTGACTGAGGCTGAGTATGATTACAGTGATGCTGAGATTCTTGTTGAAGATATCCCTGTGGGTATTCATCGCTGTATATTGGCACCGCGAAGTCCGTTCTTTCATGAGCTTTTTAAGAAAGGGACTGATGGATCATCAGGGAAGGAAGGAAAGCCGAGGTATCTCATGTCAGATTTGGTTCCTTATGGCAGAGTTGGACATGAAGCTTTCCAAGTGTTCTTGTACTATTTGTACACTGGAAGGCTTAAGGCTTCACCAACAGAAGTAACAACATGTGTTGATGAAACATGTATCCATGATGCATGTCGCCCTGCGATCAATTATGCTTTGGAGTTGATGTATGCTTCTGCCACTTTTCAGATGAAAGAGCTGGTGTTACTTTTTCAGCGGCATCTCCTAAATTTTGTTGAGAAAGCTGTTGTGGAAGATGTCATTCCTATTCTTATGGCTGCTTTCAACTGCCAACTGGAACAGCTACTCTCTCGGTGCATTCAGAGAGTAGCAAGGTCTGACTTTCACCACACATCTTTGGAAAAAGAGCTTCCTCATGAAGTTGTGACTGAAATCAAATCACTCAGACTCCCATCTCAGCCAGAATCCACACCTAATGCAATGGAAGTGGAGTCTTTGAATGAAAAGAGTGTCAGGAGAATCCACAAGGCATTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTCTGAATGAGTCTAGTGTCACCTTAGATGATGCTTATGCCCTGCACTATGCCTGTGCCTATAGTGATTCTAAGGTTATACAAGAAGTTCTTAGTCTAGGCATGGCTGATATTCTTCGTAGAAATTCCCGAGGATACACAGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTAGCACTACTCAATAAAGGAGCACATGCATCAGATACCACTCCAGATGGACAAACTGCTCTTGCAATTTGTCAAAGGTTGACAAGACGCAAGGATTATCATGAGAAAACTGTGAAGTGTAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCCTGGAGAGGGAGATGAGAAGAAATTCTATGGCTGTGAATATCTCAGTTTCATTTTCATCACAGTTAACAGTGGATGATTTGCACATGAGACTGGATTACCTTGAAGATAGAGTTACATTTGCTAGGCTGTTGTTTCCTGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCATCACCACTCTACGCAAACTCTCCGGCTTCGAGGGGCTCAAATGGCAACCTAAAAGAAGTAGATCTAAATGAATCTCCCTCTGCTCGAACCAGAAAACTTCAGTTAAGATTACATGCCCTCATGAAAACAGTTGAGAATGGTAGGCGGTTCTTTCCCCATTGCTCTGAAGTGCTTGATAAGTTTCTTGAAGATGACATGCCAGATGTTTTCTTCCTAGAGAAGGGAAGTGAAGACGAGCAGCTAATCAAGAAAGCACGCTTCATGGAACTTAAAGATGATGTGCAGAAGGCATTTAACAAGGATATGGCTGAAAATAACCATTCTGCTTTTTCATCTTCAGTGTCTTCCTCATCTTCCTCAACTCGTAACCACAGACTGAGGAGAAAATGA 1911 0.426 LLKPLPRVSYSRFASGSFSQASVEFFFPLSSKGNTLPLTQLESCIFEFMDNSNDSSSSLSFVSSHLSHGSSNHNVSSSTSNEHGANTEILSLNKLSGSLEKLLTEAEYDYSDAEILVEDIPVGIHRCILAPRSPFFHELFKKGTDGSSGKEGKPRYLMSDLVPYGRVGHEAFQVFLYYLYTGRLKASPTEVTTCVDETCIHDACRPAINYALELMYASATFQMKELVLLFQRHLLNFVEKAVVEDVIPILMAAFNCQLEQLLSRCIQRVARSDFHHTSLEKELPHEVVTEIKSLRLPSQPESTPNAMEVESLNEKSVRRIHKALDSDDVELLKLLLNESSVTLDDAYALHYACAYSDSKVIQEVLSLGMADILRRNSRGYTVLHVAARRKDPSILVALLNKGAHASDTTPDGQTALAICQRLTRRKDYHEKTVKCKESNKDRLCVDVLEREMRRNSMAVNISVSFSSQLTVDDLHMRLDYLEDRVTFARLLFPAEARVAIENAEADSSPLYANSPASRGSNGNLKEVDLNESPSARTRKLQLRLHALMKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGSEDEQLIKKARFMELKDDVQKAFNKDMAENNHSAFSSSVSSSSSSTRNHRLRRK 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2415 636 SUPERFAMILY POZ domain 108 236 IPR011333 -
Aed3g2415 636 ProSiteProfiles Ankyrin repeat profile. 378 410 IPR002110 GO:0005515
Aed3g2415 636 ProSiteProfiles Ankyrin repeat region circular profile. 378 403 - -
Aed3g2415 636 Gene3D - 312 453 IPR036770 -
Aed3g2415 636 SMART ANK_2a 344 374 IPR002110 GO:0005515
Aed3g2415 636 SMART ANK_2a 315 343 IPR002110 GO:0005515
Aed3g2415 636 SMART ANK_2a 378 407 IPR002110 GO:0005515
Aed3g2415 636 Pfam Domain of unknown function (DUF3420) 277 321 IPR024228 -
Aed3g2415 636 Pfam Ankyrin repeats (many copies) 370 418 IPR002110 GO:0005515
Aed3g2415 636 PANTHER REGULATORY PROTEIN NPR3 49 631 IPR044292 GO:0009862|GO:2000022|GO:2000031
Aed3g2415 636 MobiDBLite consensus disorder prediction 614 636 - -
Aed3g2415 636 Gene3D Potassium Channel Kv1.1; Chain A 77 276 IPR011333 -
Aed3g2415 636 PANTHER REGULATORY PROTEIN, PUTATIVE-RELATED 49 631 - -
Aed3g2415 636 Pfam NPR1/NIM1 like defence protein C terminal 420 624 IPR021094 -
Aed3g2415 636 Pfam BTB/POZ domain 107 196 IPR000210 GO:0005515
Aed3g2415 636 MobiDBLite consensus disorder prediction 614 628 - -
Aed3g2415 636 SMART BTB_4 111 238 IPR000210 GO:0005515
Aed3g2415 636 ProSiteProfiles BTB domain profile. 111 188 IPR000210 GO:0005515
Aed3g2415 636 MobiDBLite consensus disorder prediction 508 532 - -
Aed3g2415 636 CDD BTB_POZ_NPR_plant 93 238 - -
Aed3g2415 636 SUPERFAMILY Ankyrin repeat 308 421 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2415 Aed-Chr3 27017567 27020585 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Aed3g2415 NPR1_like_C 1.6e-82 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2415 K14508 - gmx:100814739 987.638