Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2405 ATGAACAACAACAGTATTCCTGGTTGGGATTTTGAGAATGATACATGTCTCACCAACCAAAGAAAGCTGATAGGGCCAGATCAGCAAGAACTTGTAGAGCTCCTATGGCAAAATGGGCAAGTAGTTATGCAAAACCAAACACATAGGAAGCCACTTGGGAATTCATCTAACATGAGAGTACATGTGCAGAAAACTGATCAATCAACATTAAGGTCTAGTGGGCCATATGGGAACTCAACCAACTTGGATCAAGAAGAGGAAGCCCCATCATGGATCCAATTCCCACTTGAGGACCCATTGGAACATGATTGTTGTTCAAACCTTTTATCTGAACTACCACCTTACAAGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAATTTTTTTGCCACTACTACTTCAAGTTCACAACCACTACCACCTAACATGAAATCCTCCTGTGTTCAGGGACTCCAAGGGAATCCTATTCTTATGCCTGCTCCAAGATTTCATGTTCCTGATTCATCTCAGAAAATCAATGACTTTGTTGCATCACGAAAGGTTCTAAATTTTCCACACTTTTCAACACCCCTTAATAATGTTTCTTCAGCACCTGGTAGTACACAGTTTAGGGAAAAAACTACTGCTAACCTGTCACAAAGTGAGGCTAGAGAGTACTCAGTGATCACAGTTGGTTCAAGTCACTGTGGAAGCAATCACATACCTCAGGAGCAAGATGTAAGCATGGTTTCAAGCAGTGGTGTTTGGGCCACTACTAACAATACTACTTTATCTGCTGAGCCTGAAGCTGTCAGAGATTGTGTCCAAAGACCAATTTGTCCTAGGAGTGACAAAGACAAAGGAAAATCAGAGATGATTGAACCAACTGTGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTAATGGAAGAAATTTTTCCCTATCAACAAGAGATCATGGCCGAAAGAGAAAAGCAACAGAAGAAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAACAAGGCTTCTCAGCGGACGGGGTCTTCCAGAAGGAACCGTGCATCTGAAGTGCATAATCAATCAGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGGACATTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATCGAATACTTAAAATCACTTCAATTTCAACTTCAGGTAATGTGGATGGGGGCGGGCATGACACACACACCAGTGCTGTTCCCAGGAATTCAACACTATATGCCACAAATGGGTATGGGAATGGGTGCAGCATCCATTCATCAATTACCAAAAGTGACCTCACATGATCAACAGGCCATGCCAAACCACCAGAATTTAATGTGCCAAAATTCAATAATGAGTACCTTTAATTACCAAAACCACCAGTGCCACATTCCTGAACAATATGCACGTTATATGGGTTATCATCTCATGCAAACTACTTCTCAGCACCAGGCAATGAATAATAACGTGTTGAGATATGGTTCCCATTCCGAAGCACAAGGAGTGCAACATAGTCAAACAATGATTGCAGCAGGCAATAATAGCAGCGGACCCATGACTGGAACAGCTAATAATAATATTGATGAACTTGTTCCTGTTAGTGCCAAAGCGGGTTCTTCCACCTTTAACACCTAA 1686 0.4217 MNNNSIPGWDFENDTCLTNQRKLIGPDQQELVELLWQNGQVVMQNQTHRKPLGNSSNMRVHVQKTDQSTLRSSGPYGNSTNLDQEEEAPSWIQFPLEDPLEHDCCSNLLSELPPYKPIRQLEEEKFANFFATTTSSSQPLPPNMKSSCVQGLQGNPILMPAPRFHVPDSSQKINDFVASRKVLNFPHFSTPLNNVSSAPGSTQFREKTTANLSQSEAREYSVITVGSSHCGSNHIPQEQDVSMVSSSGVWATTNNTTLSAEPEAVRDCVQRPICPRSDKDKGKSEMIEPTVTSSSGGSGSTGNGRNFSLSTRDHGRKRKATEEEASEEQSEATELKSADGNKASQRTGSSRRNRASEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGAGMTHTPVLFPGIQHYMPQMGMGMGAASIHQLPKVTSHDQQAMPNHQNLMCQNSIMSTFNYQNHQCHIPEQYARYMGYHLMQTTSQHQAMNNNVLRYGSHSEAQGVQHSQTMIAAGNNSSGPMTGTANNNIDELVPVSAKAGSSTFNT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2405 561 Pfam Helix-loop-helix DNA-binding domain 358 404 IPR011598 GO:0046983
Aed3g2405 561 MobiDBLite consensus disorder prediction 287 309 - -
Aed3g2405 561 MobiDBLite consensus disorder prediction 269 371 - -
Aed3g2405 561 SMART finulus 360 409 IPR011598 GO:0046983
Aed3g2405 561 MobiDBLite consensus disorder prediction 336 351 - -
Aed3g2405 561 Coils Coil 318 338 - -
Aed3g2405 561 MobiDBLite consensus disorder prediction 65 87 - -
Aed3g2405 561 PANTHER TRANSCRIPTION FACTOR PIF5 5 532 - -
Aed3g2405 561 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 354 403 IPR011598 GO:0046983
Aed3g2405 561 MobiDBLite consensus disorder prediction 352 371 - -
Aed3g2405 561 MobiDBLite consensus disorder prediction 310 335 - -
Aed3g2405 561 CDD bHLH_AtPIF_like 354 417 - -
Aed3g2405 561 MobiDBLite consensus disorder prediction 272 286 - -
Aed3g2405 561 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 5 532 IPR031066 -
Aed3g2405 561 Coils Coil 360 380 - -
Aed3g2405 561 Gene3D - 349 410 IPR036638 GO:0046983
Aed3g2405 561 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 351 419 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2405 Aed-Chr3 26961172 26964764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2405 8 522 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.151 3.28e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aed3g2405 HLH 4.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2405 K16189 - gmx:100811345 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2405 3 26961172 26964764 Aed3g2405 3 26961172 26964764 ECH