Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2400 ATGAAGCTTTCTTCTGCTGGATTTAATCCACCGGCTGAAGAGGAAGGGGAGAAGAAATGTTTGAATTCTGAACTTTGGCATGCATGTGCTGGCCCTCTGGTTTCTCTGCCTCCTTTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCATCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCACAACTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACTTTGCAACCTCTAAGTCCACAAGAGCAGAAGGAGGTGTATCTGCTGCCTGCAGAATTGGGTACTCCCAACAAGCAACCGACTAACTACTTCTGCAAAACATTAACTGCGAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCCCTTGATTACTCACTGCAGCCTCCTGCTCAGGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAATTCAGGCATATATTTCGAGGTCAGCCCAAAAGGCATCTTCTTACTACGGGGTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCTGGCGATTCAGTACTTTTCATCTGGAATGAAAAAAACCAATTACTCTTGGGAATACGGCGAGCGAATCGTCCTCAGACTATCATGCCATCATCGGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCAGCCACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCTCTGGCCAAGTATGTTAAAGCTGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCAGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCAATGTATCCGTCTCCATTCCCCTTGAGGTTGAGGCGCCCTTGGCCATCAGGCCTACCTTCTTTATATGGTCTTAAGGATGGAGACATGGGCATTGGTTCTCCACTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATGCTTCTATACCGGGTCTCCAACCAGAGTTATACCAAACAATGACTTCTTCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTTGCAATCTCTGTTGCAGTTTCAGCAGACTTCAAATGTCCCCAGTGCTCATGCTTCTGAGGTACAGAGGCAACAGCAGAGCTTTCCTGAACCTATCAGGAATCATATTTCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGGTCATTCTCCCAGGATGGAACATCTCAGTTACTTAACTTGAGTGGATCCAATTCCGTTATATCTTCTGCAGCCATACTACCCAAGCAAATAACCGCTGAACCTACTCAAATTCCATCTGCTGTTTCTCAGTGCGTGTTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAATGTGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATAGGCAATGTGAATGATTCATTATCGTTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACAGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCAAGTTGTGTTCACAAGTTAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGCAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATATTCTTCTTCTCGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTATGGTACATAAAAATACTATCTCCACTAGAAGTGCAACAAATGGGCAATGATGTTAGTCCTTCTACTCCTGGCAACTCTTGTGATACTTATGCGAGTCAACAAGAGTTGAGAAATTCGAGAAATGGCATGGCTCCAATGGGTCGATATTTGACAAACGGTAGTGCGAATATTGACAACTTTTCGTGA 2364 0.4509 MKLSSAGFNPPAEEEGEKKCLNSELWHACAGPLVSLPPFGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKEVYLLPAELGTPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSLQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMGIGSPLMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQTMTSSAFQEMRTMDPSKSLQSLLQFQQTSNVPSAHASEVQRQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLSGSNSVISSAAILPKQITAEPTQIPSAVSQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNIGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVHKLGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDILLLGDDPWQEFVNNVWYIKILSPLEVQQMGNDVSPSTPGNSCDTYASQQELRNSRNGMAPMGRYLTNGSANIDNFS 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2400 787 Gene3D - 293 365 - -
Aed3g2400 787 Pfam AUX/IAA family 661 734 IPR033389 -
Aed3g2400 787 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Aed3g2400 787 Gene3D - 127 230 IPR015300 -
Aed3g2400 787 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Aed3g2400 787 ProSiteProfiles PB1 domain profile. 650 736 IPR000270 GO:0005515
Aed3g2400 787 SUPERFAMILY CAD & PB1 domains 667 726 - -
Aed3g2400 787 CDD B3_DNA 128 229 IPR003340 GO:0003677
Aed3g2400 787 SUPERFAMILY DNA-binding pseudobarrel domain 114 258 IPR015300 -
Aed3g2400 787 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Aed3g2400 787 PANTHER AUXIN RESPONSE FACTOR 6 1 487 - -
Aed3g2400 787 PANTHER AUXIN RESPONSE FACTOR 6 655 750 - -
Aed3g2400 787 PANTHER AUXIN RESPONSE FACTOR 6 482 656 - -
Aed3g2400 787 MobiDBLite consensus disorder prediction 473 497 - -
Aed3g2400 787 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 487 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed3g2400 787 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 655 750 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed3g2400 787 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 482 656 IPR044835 GO:0003677|GO:0006355|GO:0009725
Aed3g2400 787 SMART B3_2 129 231 IPR003340 GO:0003677
Aed3g2400 787 Gene3D - 646 741 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2400 Aed-Chr3 26927214 26935302 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2400 485 773 B3 DNA Binding Superfamily AT1G30330 48.657 3.89e-68 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Aed3g2400 B3 4.9e-21 CL0405