LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g2394	ATGTTGACCGCAATCCTCAGAAGAACCTGTACCAGCCTCTCAAGGCGCGTTCTCACCGCCGCCTTAACCACCGCCGGGAACCAATTCCGGCCAGTCTCCGCCCCCTTCCACTCCAGGGCTGGCCCCTTGAATTTCCGGTCCTCTTTATGTCACCGCGCGGAATACGCCGTAGACGATCTCCCTTACGAAGAAGGGTCGAAAGTGAACGCCGACGAAGGCCTCGAGATCGCGAAGCTCGGAATATCTCAGGATATTGTCTCCGCTTTGGCTAAGAAAGGCATCACCAAACTCTTCCCCATTCAGGAGGGGGAGGGATCCTTTGGCTTTGGTTTTGGCTCCGACCAGAGAGCTTGCGCGACAGCACCTAATTTGGATACAATTTGTGTTTATGGGGGTACACCCATCTCTAGGCAGATGAGGCAGCTTGATTATGGGGTTGATATTGCTGTGGGGACGCCTGGTCGGATTATTGACCTTCTCAACAGAGGTGCTCTAAATTTGAAGGATGTTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAGGTTGGCTTTCAGGAAGAAGTGGAGAAGATCTTGGAGAGGTTGCCCCCAAAACGTCAGACTCTGATGTTCTCTGCAACAATGCCATCTTGGATAAAGCAGATTTCACGCAATTACCTGAAAGATCCCCTGACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGGATTTCACTGTACTCCATTGCAACTGATTTGTATGTTAAAGCGGGAATTCTTGCACCTCTAATTACAGAACATGCAAAAGGAGGAAAGTGTATAGTTTTCACTCAAACAAAACGTGATGCTGATCGATTATCGTATACCATGGCAAAAAGTCTTCAGTGTGAGGCGTTGCATGGAGACATATCACAAGCTCAGAGGGAAAAAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTGGCCTCGCGTGGGCTTGACATACCTAATGTTGATCTTATAATACATTATGAACTTCCCAATTCTTCGGAGATATTTGTTCATCGATCTGGGCGAACAGGTCGTGCTGGTAAGAAAGGAACTGCTATTCTTGTGTATACAGAAGATCAATCAAGGGCTGTTAGGCTTATTGAGCGTGATGTGGGCTGTAGATTTACTGAGCTACCACGAATTGCTGTTGATAGTGCATCAGTGGACCCAGTTGGCATGAGTGATCGTTCGGGTGGCTTTGGAGATTTTGGTAATTCTCGTGGTAGTAATCAGAACAATAGAAGATCTTTTTAA	1299	0.4673	MLTAILRRTCTSLSRRVLTAALTTAGNQFRPVSAPFHSRAGPLNFRSSLCHRAEYAVDDLPYEEGSKVNADEGLEIAKLGISQDIVSALAKKGITKLFPIQEGEGSFGFGFGSDQRACATAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDVQFVVLDEADQMLQVGFQEEVEKILERLPPKRQTLMFSATMPSWIKQISRNYLKDPLTIDLVGDSDQKLADGISLYSIATDLYVKAGILAPLITEHAKGGKCIVFTQTKRDADRLSYTMAKSLQCEALHGDISQAQREKTLAGFRNGHFNVLVATDVASRGLDIPNVDLIIHYELPNSSEIFVHRSGRTGRAGKKGTAILVYTEDQSRAVRLIERDVGCRFTELPRIAVDSASVDPVGMSDRSGGFGDFGNSRGSNQNNRRSF	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g2394	432	CDD	SF2_C_DEAD	254	371	-	-
	Aed3g2394	432	MobiDBLite	consensus disorder prediction	409	432	-	-
	Aed3g2394	432	Pfam	Helicase conserved C-terminal domain	257	362	IPR001650	-
	Aed3g2394	432	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	74	102	IPR014014	GO:0003724
	Aed3g2394	432	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	32	102	-	-
	Aed3g2394	432	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE	32	102	-	-
	Aed3g2394	432	SMART	helicmild6	282	362	IPR001650	-
	Aed3g2394	432	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	257	401	IPR001650	-
	Aed3g2394	432	MobiDBLite	consensus disorder prediction	418	432	-	-
	Aed3g2394	432	SMART	ultradead3	14	245	IPR014001	-
	Aed3g2394	432	PANTHER	ATP-DEPENDENT RNA HELICASE DBP3	118	407	-	-
	Aed3g2394	432	Gene3D	-	113	232	IPR027417	-
	Aed3g2394	432	CDD	DEADc	119	229	-	-
	Aed3g2394	432	Gene3D	-	247	403	IPR027417	-
	Aed3g2394	432	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE	118	407	-	-
	Aed3g2394	432	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	122	383	IPR027417	-
	Aed3g2394	432	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	129	228	IPR014001	-
	Aed3g2394	432	Pfam	DEAD/DEAH box helicase	124	216	IPR011545	GO:0003676\|GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g2394	Aed-Chr3	26885632	26888567	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g2394	116	399	Eukaryotic Initiation Factors Gene Family	AT3G19760	32.168	2.72e-51	176

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g2394	-		-	gmx:100786041	678.322