Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2392 ATGGCTTTCTTTAGGAACTTTTCAAATGATACAGTCTCACATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCTAATAGAGTTCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGCCGAACCAGATGGTTCCAGTAGACTGCAAACTGAGGCAACCGCTGATGATGGAGATGCTGTAAAAGAATCAAACTTGCAGACTACTGGTAGTAAAACAGCTATGGTTGGAAGGTGGGGTTCAACATTTTGGAAGGACTGTGGGCAAATGGACCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGTTCAGATTATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCGGGAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGTCTAAGAGGTCACTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAGCCAAGTGACTCATTGCATTACGGTGGGATAAAAAAGCCCACTGGATCGAATTCATGGCCACAACGGATGTCAACCTCTGCAAATAGAACTTTGCATAGGAATTCGAGGTTTTCAGATGATGCTGAAGATAATGATGATGAAGATGATGGTGATAATGATAATAACGGTAATGATGTTGATTATGAAGATGAGGACGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCCGCCACCAGTGGTCATGCTGGAAACAAGGATAAAGATTGGGAAGGTGAAGGATCGGATGAAGATGATGACAGTGATGAAAATATAGTTGTCTCAGATGATGATGAATCTTTCTATGCTAAAAGACCTAAAGGAAGGCAACAGGGTAAGATTGGACAAAACATAAAATCTACCAGAGATCGCAAAGTGTATGCTACATCTGGTCGACAAAGAAGACTTAAATCATCTTTTGAGGACAATGAGTCAACAACGGAGGATTCTGACAGTGATAGTGATGAGGATTTCAGAAGCACAAAAAAGCGGAGTGTTCATGTCCGCAAGAATAATGGTCGCTTGTCTGCAGCCACAGGTTTTTCTTCCCGCAACAGCGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGACCCTGTTCTAATGAGCCACTTGTTTGATTCGGAAATTGATTGGAATGAGACAGAATTTTTAATAAAATGGAAAGGGCAATCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAACCTCAGTGGTTTTAAAAAGGTTTTGAATTATACAAAGAAAATATTTGAAGACATCAGGCACAGGAGGACAATCACAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATCGATATTGCTTTTGCTCAACATGCTATTGATGAGTATAAGGCTCGTGAGGCTGCTATGGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGCGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACCAATGTCATTTTAGCTGATGAAATGGGCCTTGGGAAAACTGTTCAGTCGGTATCGATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCATTGTCTACTTTATCAAATTGGGCCAAAGAGTTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAAACCTGGGAAGCCAATAAAATTCAATGCATTGTTGACTACATATGAAGTAGTTTTGAAAGATAAGGCTGTTCTCTCCAAGATCAAATGGAGTTATCTGATGGTGGATGAAGCTCATAGGCTAAAAAATAGTGAGGCACAATTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCTTTGCTTCATTTCCTTGATCCTGACAAGTTCAGGAGCAAGGACGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAGAATGAGCTTGCAAATCTGCATATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAAAAATCATTACCCCCCAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTTTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCTTTCTTGTTTGAAAGTGCTGACCATGGATATGGCGGGGACTCAGGAAGTAGTGACAACAGTAAACTGGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTTTGATTTTTTCTCAGATGGTTAGGATGTTAGATATACTGGGGGAGTATATGTCACATCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTGCGGCAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACAAGAGCAGGAGGTCTGGGTATCAACCTTGCCACAGCAGATACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGACAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAGGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGATCACTTGGTGATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAAGAAAGCAAGAAACAACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGTTGACAAGGAACAAGGAAATGAGTTATTAGGTGCTTTTAAGGTTGCCAATTTTTGCAATGGTGAAGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTCCAAGCAGAGGAAGCTCTTGCTCCTCGATCTGCTAGAAATATTAAAAGCTATGCAGAGGTCGATCCATCTGAAAGAAGTAGTAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCATAAACGCCGGAAAGCAGAGTATTCCGCTCCTGCAGTACCAATGATTGAGGGAGCATCTGTCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAGAGAGACGCACTTCGTTTTTCTCGTTCAGTTGTGAAATATGGCAATGAGAGCCAAATTGACTTAATTGTTGCTGAGATTGGTGGTGCTGTTGGGGCAGCTCCACTGGGAGCACAGATTGAACTTTTCAATGCTCTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATCTAGATGCAAAGGGGCCTTTGCTGGATTTTTTTGGTGTACCAGTGAAGGTAAATGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGGTCGATATGAAGATCCTGTTTCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTCCTTGGAATACATTACCATGGGTTTGGTAATTGGGAAAAGATTAGATTAGATGAAAGACTCGGCCTTACGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTGCCAAGAGCTCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTTGGTGTGAAAAATGCCAATAACAGAGTTGGACGGAAGCCTTCCAAGAAAGAAAGAGAAAATGTGATTAATATCTCACTGTCACGTGGGCAGGAGAAAAAGAAAAAATTGGGTTCTGTTAATATCCAAATTAGAAAGGATAGATTTCAGAAACCCCAGAAGGTTGAATCTATAGTTAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTTAAGGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCAAAGGAAAAGGTGCTTTCGAAAATACGCAACTATTTACAACTTCTTGGGAGAAGGATAGATCAAATTGTGCTAGAACATGAACAGGAACCTTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCCACCTTTTCTCATCTTTCAGGGGAGAGGCTTCATCAAATATATTCCAAACTTAGGCAGGAGCAAGATGAGGCAGGGGTTGGCCCCTCTCACGCCAATGGGTCGGTATCTGTTTCATTTAGCAGAAATGGAAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAATATGACTACCTATCAAATGCCAGAACCAGTTGATAATACTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAACTGAAAATGACAATCATTTCCAGGGTCAGCCGCCACCTCAAAGGACCATAAGTAATGGGATCCGGATTACTGATCCTAACTCACTCGGGATCCTAGGTGCTGGGCCATCGGACAAACGCTTTGCTAGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCTTCAGGTATAAAGTAA 5286 0.4071 MAFFRNFSNDTVSHGVMEDKSQGQNANRVHRSVGNECTDATSSEKEFDMNMEAQYESDAEPDGSSRLQTEATADDGDAVKESNLQTTGSKTAMVGRWGSTFWKDCGQMDPQNGSESGQESKSGSDYRNADGSEDNSLDGRAGRLDSDDDDGQKEAGKGLRGHSDVPAEEMLSDEYYEQDGEEPSDSLHYGGIKKPTGSNSWPQRMSTSANRTLHRNSRFSDDAEDNDDEDDGDNDNNGNDVDYEDEDEADEDDPDDADFEPATSGHAGNKDKDWEGEGSDEDDDSDENIVVSDDDESFYAKRPKGRQQGKIGQNIKSTRDRKVYATSGRQRRLKSSFEDNESTTEDSDSDSDEDFRSTKKRSVHVRKNNGRLSAATGFSSRNSEVRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGMAEDAQRNNRSTDPVLMSHLFDSEIDWNETEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIFEDIRHRRTITREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSHRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKQLLSMDIDEILERAEKVEEKEVDKEQGNELLGAFKVANFCNGEDDGSFWSRWIKPDAVFQAEEALAPRSARNIKSYAEVDPSERSSKRKKKEPEPPERVHKRRKAEYSAPAVPMIEGASVQVRNWSYGNLSKRDALRFSRSVVKYGNESQIDLIVAEIGGAVGAAPLGAQIELFNALIDGCTEAVELGNLDAKGPLLDFFGVPVKVNDLLTRVQQLQLLAKRIGRYEDPVSQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIHYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANNRVGRKPSKKERENVINISLSRGQEKKKKLGSVNIQIRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHANGSVSVSFSRNGNPFRRHMERQRGLNMTTYQMPEPVDNTGKSEAWKRRRRTENDNHFQGQPPPQRTISNGIRITDPNSLGILGAGPSDKRFASEKPYRTQPGGFPSRQGFSSGIK 1761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2392 1761 MobiDBLite consensus disorder prediction 322 341 - -
Aed3g2392 1761 Pfam Domain of unknown function (DUF4208) 1539 1631 IPR025260 -
Aed3g2392 1761 Gene3D - 1357 1469 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1 427 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 395 427 - -
Aed3g2392 1761 SMART ultradead3 626 826 IPR014001 -
Aed3g2392 1761 Gene3D - 621 860 IPR038718 -
Aed3g2392 1761 ProSiteProfiles Chromo and chromo shadow domain profile. 425 504 IPR000953 -
Aed3g2392 1761 SUPERFAMILY Chromo domain-like 516 593 IPR016197 -
Aed3g2392 1761 CDD CD1_tandem 423 503 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 105 125 - -
Aed3g2392 1761 SMART helicmild6 976 1060 IPR001650 -
Aed3g2392 1761 Gene3D - 540 592 - -
Aed3g2392 1761 Pfam SNF2-related domain 649 918 IPR000330 GO:0005524|GO:0140658
Aed3g2392 1761 Gene3D - 861 1091 IPR027417 -
Aed3g2392 1761 Coils Coil 1144 1164 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1676 1761 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 79 94 - -
Aed3g2392 1761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 851 IPR027417 -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 223 258 - -
Aed3g2392 1761 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 760 769 IPR002464 -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1 40 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 196 214 - -
Aed3g2392 1761 SMART DUF4208_2 1527 1632 IPR025260 -
Aed3g2392 1761 Pfam Helicase conserved C-terminal domain 947 1060 IPR001650 -
Aed3g2392 1761 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 112 1664 - -
Aed3g2392 1761 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 814 IPR014001 -
Aed3g2392 1761 SMART chromo_7 536 595 IPR000953 -
Aed3g2392 1761 SMART chromo_7 423 506 IPR000953 -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 372 394 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1702 1721 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1220 1250 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 276 293 - -
Aed3g2392 1761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 1136 IPR027417 -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1636 1660 - -
Aed3g2392 1761 CDD CD2_tandem 536 592 - -
Aed3g2392 1761 Coils Coil 1090 1110 - -
Aed3g2392 1761 CDD SF2_C_SNF 936 1071 - -
Aed3g2392 1761 ProSiteProfiles Chromo and chromo shadow domain profile. 538 602 IPR000953 -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 126 169 - -
Aed3g2392 1761 Pfam Chromo (CHRromatin Organisation MOdifier) domain 539 593 IPR023780 -
Aed3g2392 1761 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 950 1101 IPR001650 -
Aed3g2392 1761 SUPERFAMILY Chromo domain-like 422 505 IPR016197 -
Aed3g2392 1761 Gene3D - 411 538 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1221 1250 - -
Aed3g2392 1761 MobiDBLite consensus disorder prediction 1686 1701 - -
Aed3g2392 1761 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 112 1664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2392 Aed-Chr3 26855297 26875228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2392 652 1087 RAD5 or RAD16-like Gene Family AT1G02670 25.794 9.16e-35 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed3g2392 SNF2_N 2.3e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2392 K11367 - gmx:100808039 3167.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2392 3 26855297 26875228 Aed3g2392 3 26855297 26875228 ECH