Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2386 ATGGAAGGGTTCGGAATGGCTTCGGATCTTAGCAGAACCGGTCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCCTTCTCAAGTATGGAAGAAGGGGAAGGCCCAAGTTTTGCCCCTTCCGTCTTTCCAATGACGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTGAGTCATGTCTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATACCAATCATTTTCTCTCATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTTTGGTTCAGTGGTTTGAAAGCATTAATTTCTCGTAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACCAGAAGGAGTTCTCCCTTGAATTCTCCATTTGGCAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGTCCCTATGAGAGCCCCCCCAAGAATGGTCTGGATAAAGCATTAGATGTGGTTTTGTATGCTGTCCCTCAAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCATCTGGAGGATCAGACAGTATGCATGGTCACATGAAAACAATGGGTATGGATGCTTTCAGAGTTAGTCTATCAAGTGCTGTTAGCACATCTAGCCAAGGTTCTGGTCATGACGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCATAGGTGATGGCGTTTTGGGTGGTGGGACTAATCGTGTTGGAAGTTGTTCGGGTGTAAAAATGGATTCTCTATTTCCCAAAGCTTTGGAATCTGCAGTTGTTCTTGATGTACAGAATATTGCATGTGGTGGACGACATGCAGCCCTAGTGACCAAACAGGGAGAAATTTTCTCCTGGGGAGAAGAATCGGGCGGCAGGCTTGGGCACGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTCTTAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAATATCATACGTGTGCTGTTACACTTTCTGGTGATCTGTATACATGGGGTAATGGCACATACAATTATGGCCTTTTAGGGCATGGAAATCAAGTGAGCCACTGGGTACCAAAAAGAGTAAATGGCCCCTTGGAAGGTATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTAACATCTGCTGGCCAATTATTTACTTTCGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTATTTCATTACCAAGGGAAGTCGAGTCTCTCAAGGGTCTTCGTACTGTGCGGGCTGCATGTGGTGTTTGGCATACTGCTGCAGTCGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGTTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGCCGACTTGGGCATGGTGATAAGGAAACAAAACTTGTTCCAACCTGTGTTGCCCTTGTTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAATCCGTGTTGAAGGGAAATTGTCAAAGAGTTTTGTGGAGGAGATAGCTTGTGGTGCATATCATGTTGTGGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGAAAGGGTGCAAATGGCCGTTTAGGCCATGGGGACACGGATGATAGAAATACCCCAACATTAGTAGAAACTCTGAAAGACAAAGATGTCAAAAGTATTGCTTGTGGATCTAATTTCACTGCAGCTATTTGTTTGCATAAGTGGGTATCTGGTGTTGACCAGTCTAAGTGTTCAGGCTGTCGTATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTATAATTGCGGACTTGTTTTTTGTCATTCATGTAGCAATAAGAAATCTCTCAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAATAAACTTAGGAAAACTGTAGAAACTGATTCTTCATCTCATTCCTCTGTGAGCAGAAGAGGAAGTGTCAATCAGGGATCTCTGGAGTTGATTGATAAGGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGGTTTTCTTCAATAGAATCCTTCAAACAAGTGGAAAGCAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTCTCGCCTGTTCCAAATGGGGGTTCACAATGGGGAGCATTGAACATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCGAAGAAATTTTTCTCTGCTTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCCAGTCCACCTCGTTCAACTACACCAACCCCAACATTGGGAGGTCTTACATCCCCAAAGATAGTTGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAAGCCCAACTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAATAGCAATTGCCGGGGAAGAAACTGTCAAATGTAAAGCAGCAAAGGAAGTAATAAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTACCTGTTGGAGCTGCCAGGAATGTGAAATCACCGACTCTTGCTTCTTCTTTTGGTTCCAATCCTCTTTCTAATGATGTTGGTTATGCTTCCATTGATCGGATAAATATTCAAGCAACAAGCCCAGAGGCAGATTTAACTGGATCAAACAACCAGTTACATTCAAATGGATCAAGCACGGTCAGTAGCCGTAGCACAGGACACACTAAACAGAGCCAGTCAGATTCAACAAATAGAAATGGGAGCAGAACTAAGGACAGTGAATCCCGTAATGAAACTGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACACTCACCTCCCTTCCAGGAGGAATAATAGATCTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAGGCAGAGCAATGGTGGGCTGAGAATCGCACAAGAGTACACGAAAAGTACAATGTGCGTCTGATTGACAAGTCTTCAATTGGTGTTGGGAGTGAAGACCTGGGTCATTGA 3321 0.4348 MEGFGMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGRPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGIGDGVLGGGTNRVGSCSGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSISLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKETKLVPTCVALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEIACGAYHVVVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVETLKDKDVKSIACGSNFTAAICLHKWVSGVDQSKCSGCRMPFNFKRKRHNCYNCGLVFCHSCSNKKSLKASMAPNPNKPYRVCDNCFNKLRKTVETDSSSHSSVSRRGSVNQGSLELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETVKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPTLASSFGSNPLSNDVGYASIDRINIQATSPEADLTGSNNQLHSNGSSTVSSRSTGHTKQSQSDSTNRNGSRTKDSESRNETEWVEQDEPGVYITLTSLPGGIIDLKRVRFSRKRFSEKQAEQWWAENRTRVHEKYNVRLIDKSSIGVGSEDLGH 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2386 1106 MobiDBLite consensus disorder prediction 726 751 - -
Aed3g2386 1106 Coils Coil 864 905 - -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 1021 1037 - -
Aed3g2386 1106 Gene3D - 495 667 IPR009091 -
Aed3g2386 1106 Pfam Transcription factor regulating root and shoot growth via Pin3 1032 1087 IPR013591 -
Aed3g2386 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 434 IPR000408 -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 778 801 - -
Aed3g2386 1106 SUPERFAMILY RCC1/BLIP-II 265 655 IPR009091 -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 726 741 - -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 982 1020 - -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 982 1037 - -
Aed3g2386 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 1092 - -
Aed3g2386 1106 ProSiteProfiles BRX domain profile. 1033 1088 IPR013591 -
Aed3g2386 1106 SUPERFAMILY PH domain-like 19 127 - -
Aed3g2386 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 473 483 IPR000408 -
Aed3g2386 1106 Coils Coil 920 940 - -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 787 801 - -
Aed3g2386 1106 CDD FYVE_like_SF 663 716 - -
Aed3g2386 1106 CDD PH_PLC_plant-like 18 128 - -
Aed3g2386 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 727 IPR013083 -
Aed3g2386 1106 Pfam Pleckstrin homology domain 21 127 IPR001849 -
Aed3g2386 1106 Pfam Unstructured region between BRX_N and BRX domain 957 1026 - -
Aed3g2386 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 421 431 IPR000408 -
Aed3g2386 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 435 486 IPR000408 -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 832 860 - -
Aed3g2386 1106 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Aed3g2386 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 266 327 IPR000408 -
Aed3g2386 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 328 379 IPR000408 -
Aed3g2386 1106 SMART fyve_4 652 721 IPR000306 GO:0046872
Aed3g2386 1106 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 20 1092 - -
Aed3g2386 1106 SUPERFAMILY FYVE/PHD zinc finger 654 725 IPR011011 -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 142 172 - -
Aed3g2386 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Aed3g2386 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 499 549 IPR000408 -
Aed3g2386 1106 Pfam Transcription factor BRX N-terminal domain 915 948 IPR027988 -
Aed3g2386 1106 PRINTS Chromosome condensation regulator RCC1 signature 380 396 IPR000408 -
Aed3g2386 1106 PRINTS Chromosome condensation regulator RCC1 signature 437 451 IPR000408 -
Aed3g2386 1106 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Aed3g2386 1106 PRINTS Chromosome condensation regulator RCC1 signature 311 324 IPR000408 -
Aed3g2386 1106 PRINTS Chromosome condensation regulator RCC1 signature 330 346 IPR000408 -
Aed3g2386 1106 PRINTS Chromosome condensation regulator RCC1 signature 421 437 IPR000408 -
Aed3g2386 1106 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Aed3g2386 1106 Gene3D - 19 136 IPR011993 -
Aed3g2386 1106 MobiDBLite consensus disorder prediction 136 190 - -
Aed3g2386 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Aed3g2386 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 435 483 IPR000408 -
Aed3g2386 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 328 376 IPR000408 -
Aed3g2386 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 379 431 IPR000408 -
Aed3g2386 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 549 598 IPR000408 -
Aed3g2386 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 603 650 IPR000408 -
Aed3g2386 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 498 546 IPR000408 -
Aed3g2386 1106 Pfam FYVE zinc finger 654 720 IPR000306 GO:0046872
Aed3g2386 1106 Gene3D - 391 494 IPR009091 -
Aed3g2386 1106 Gene3D - 218 390 IPR009091 -
Aed3g2386 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 314 324 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2386 Aed-Chr3 26812590 26820875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2386 924 1097 Major Intrinsic Protein MIP AT1G31880 34.555 2.39e-17 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2386 - - gmx:100802464 2038.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2386 3 26812590 26820875 Aed3g2386 3 26812590 26820875 ECH