Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2385 ATGGAAGAATCAAGTGAATTGCAATCAGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAGCTGAAAACACCGGCGCAGCTTAAGGCCTTGGAGAATTTTTATAATGAGCACAAATACCCCACAGAGGAAATGAAATTAGAACTTGCTGAGGAGTTAGGATTGACCGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAGGATAAACGATTGATGAAAGATGAAGCTGTTGCTAATGGGCGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGTGGTAGTGGGCTTGGGCAAGATTCATGCGGAAGCAGTAAGCATGCTGATCACAGGTATCTAGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCATGAATTGACAGTTGCAGATATGACCCATGGACGTAGGAACCGTTATCCTGAAAATGTTAGCGGGGTGGATGACACATCATCTGAGAGCAGCTCATTTTTGCAAGAAAGGTTGTTTTCTCAAGGTCAAGATCCATATGATATGGAGTCTTCTAGACATCTTACACCTAACGGAGCTCTTCCTCCCCTAAATCCCAAAGGTGCAGTTAACATGGGATACAAACCATCAGGATATTTGAAAGTGAAGGGCGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAAGCATTATCTGGAAGATGGTCCCCTACTTGGTATAGAATTTGATCCGCTTCCTCCAGGGGCATTTGAATGCCAAACTGCAGATCCAGCTGAACCAAACTCTGTTGCAAATCCTCTGCTTCCAAATTCTCCAGAGATCTCTGCTGCAAAAAGACAACCCAGTCTTATCTCTAGACATGATTCATATTATACTAAATTTAGTTCCCAAGATTCGCATATGGAAGGAACTGACTTTGGTTCCTTGCATGAATCTGATTTCCAGGATAAACAAGATAAGAAAGCACGCCAGAATATAAAACAAAGGCAACCTGTATACGGTTATACCAATCATTTTCCTGGAAGGAACTCTTTCCCAGATTTGTATGAAGACTCTACTGGAGAAGCATCTGCTTATAATAGCACTAAGAGTCATAGAATGAGCTCTAAACATAGTGTTGAGGGGATGCGATCTGAATCTACTTCTAATCATAGTGATCACTATGAAGAGAAGCTTACAGTTAAGCAGAAAAACTTGATGGTGCATGGTTATGATAACATCAATCCAAAGAATATACAAAGGAGTGAACATGTAAAATCTAAACCTTCTAGTTCAATCCGTAAGTCCCGTGTTCCTATGGATTCTGAAGAACGGGGGTTATCTGCTAGGATGGCAAAGGAAGAGATGTTTAAGGGGGACAGGAAAGCAAAAAACACATACCGGGATGTAGATGGAGCAGGGATGCTTTCAAATGAAATCATGGTTGCAAAACGAGCTAAAGTTGACACCCTTAAACAATACAAAGTGAAAAAATCACCTGTTGCTGAGATGGAACAAAGGAAAATTCAGAGATCTGCTGCAGAGATGCCATCTAGCTTTAGTGAGGATGAAACTGCTGACACCAGTTCCTCACTGGATTATTAA 1581 0.4092 MEESSELQSEENKVSNEKNKKRKLKTPAQLKALENFYNEHKYPTEEMKLELAEELGLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADHRYLDPKEVESHGLYNHELTVADMTHGRRNRYPENVSGVDDTSSESSSFLQERLFSQGQDPYDMESSRHLTPNGALPPLNPKGAVNMGYKPSGYLKVKGEIEHAAITAVKKQLGKHYLEDGPLLGIEFDPLPPGAFECQTADPAEPNSVANPLLPNSPEISAAKRQPSLISRHDSYYTKFSSQDSHMEGTDFGSLHESDFQDKQDKKARQNIKQRQPVYGYTNHFPGRNSFPDLYEDSTGEASAYNSTKSHRMSSKHSVEGMRSESTSNHSDHYEEKLTVKQKNLMVHGYDNINPKNIQRSEHVKSKPSSSIRKSRVPMDSEERGLSARMAKEEMFKGDRKAKNTYRDVDGAGMLSNEIMVAKRAKVDTLKQYKVKKSPVAEMEQRKIQRSAAEMPSSFSEDETADTSSSLDY 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2385 526 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Aed3g2385 526 MobiDBLite consensus disorder prediction 349 387 - -
Aed3g2385 526 MobiDBLite consensus disorder prediction 504 526 - -
Aed3g2385 526 MobiDBLite consensus disorder prediction 7 23 - -
Aed3g2385 526 MobiDBLite consensus disorder prediction 493 526 - -
Aed3g2385 526 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Aed3g2385 526 MobiDBLite consensus disorder prediction 1 28 - -
Aed3g2385 526 MobiDBLite consensus disorder prediction 294 324 - -
Aed3g2385 526 CDD homeodomain 20 75 IPR001356 GO:0003677
Aed3g2385 526 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Aed3g2385 526 MobiDBLite consensus disorder prediction 82 113 - -
Aed3g2385 526 MobiDBLite consensus disorder prediction 174 195 - -
Aed3g2385 526 SMART HOX_1 18 80 IPR001356 GO:0003677
Aed3g2385 526 MobiDBLite consensus disorder prediction 303 324 - -
Aed3g2385 526 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Aed3g2385 526 MobiDBLite consensus disorder prediction 88 106 - -
Aed3g2385 526 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 525 - -
Aed3g2385 526 MobiDBLite consensus disorder prediction 414 439 - -
Aed3g2385 526 Gene3D - 8 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2385 Aed-Chr3 26799532 26805014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2385 3 525 Homeobox Transcription Factor Family AT4G03250 41.835 1.74e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Aed3g2385 Homeodomain 2.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2385 3 26799532 26805014 Aed3g2385 3 26799532 26805014 ECH