Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2382 ATGCGTGCCACAGAGCGTAGTTGCGTGCACGCGCCGTTCCGTGTGGGATTGAGACGAATCAAAGCACTTTCAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTCGCCGACTGGGCAGCCACAACATCCTCCTCTGGTGGTGCTAGTGGCCGCGCTCTCCCCGTCGACGACCTCTCTCTCGGCTTCAATGCGGCTCCCGCTTCCGCCACCACCGGACCCGCCCCCGGAATGTGGTCCACCGCTACTAGGTCAATCAATTATCCCGAGATGGGTATGTTCGTGGTGGCGCCAGCCTCCTCCTTCCACCACCACCACCACCAACCTCCGCCACATGACCCCGCCGTCATGGCGGATTCCCTCAACCCCGCCACTGCACTCGGCGTTGGAGTCATCCCCCTCCTCGCAGCCACGCCGTGTCTCGAATCCGACAACATCCTCGGAAATAGGACACGTGGCGGGGGAATTCAGTTTTGGCAAGACCAACAACCTCATCAGCATCAAAGCCACTACATGAAGAAGCAGCAAGGTGTTCTCGACCATAGTAACACTAGTTCGGGGAATATGGTTCAGAACAGTGGCGGGGTAACTGCTTCGGGGACTAGTAGCGGTGGAACAGCAACGTGCCAAGATTGTGGAAACCAGGCAAAGAAAGATTGTACAAATAGGAGGTGCAGAACTTGTTGCAAAAGCCGAGGTTTTGATTGCCCTACCCATGTTAAGAGTACTTGGGTTCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACGGCGCCAACCACCGCGGTTGCTGGCTCCAGTGGCTCCACTTCCGGTACTAAAAAACCAAGGCTCATCGCTTCACAAACTACAACTACTTCTCACACATCCACTTCCAACACCACCCCTCCTAGAAGCTTTGACACCAGCTCTAGCCATCAAGATGCGGGTTTCAAAGAATCATTACCTGGGCAAGTACGTGCACCAGCGGTTTTCAAGTGTGTTAAAGTGACGGCGGTGGAGGATGGGGAAGATGAGTATGCATATCAGGCTGTGGTAAAGATTGGTGGCCACGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCTAACCTATCTGAGTTGCATTTGGGTGGTGGAAATGGAAGTGGAAGAAATGGGGTTTCGTCTTCATCTCCAATGATGGATCCTAATGATGTTTATGCAGGTGGAGGGTTACTAGGGGGTTCATCATCATATGGTAATATCCAATGA 1260 0.5357 MRATERSCVHAPFRVGLRRIKALSVVATTRRLPSDSGAFADWAATTSSSGGASGRALPVDDLSLGFNAAPASATTGPAPGMWSTATRSINYPEMGMFVVAPASSFHHHHHQPPPHDPAVMADSLNPATALGVGVIPLLAATPCLESDNILGNRTRGGGIQFWQDQQPHQHQSHYMKKQQGVLDHSNTSSGNMVQNSGGVTASGTSSGGTATCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAPTTAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVKVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGNGSGRNGVSSSSPMMDPNDVYAGGGLLGGSSSYGNIQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2382 419 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 93 416 IPR007818 GO:0003700|GO:0006355
Aed3g2382 419 MobiDBLite consensus disorder prediction 262 314 - -
Aed3g2382 419 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 93 416 - -
Aed3g2382 419 MobiDBLite consensus disorder prediction 259 318 - -
Aed3g2382 419 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 318 365 IPR006511 -
Aed3g2382 419 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 211 253 IPR006510 -
Aed3g2382 419 Pfam Domain of unknown function (DUF702) 209 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2382 Aed-Chr3 26770378 26773534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2382 20 403 C2H2 Transcription Factor Family AT5G12330 50.962 4.39e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Aed3g2382 DUF702 2.2e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2382 - - gmx:100817745 627.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2382 3 26770378 26773534 Aed3g2382 3 26770378 26773534 ECH