Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2357 ATGATGATGAGGTTGTTTGGGCAAGTTCTATTTGGGGTGGGAGTGGCGAGCCTGCTATTGGATGGAAATGAAAGCGCAGAGGTGGGAGTGGGTGTGACTGTGGGGCTATGTTTGATCTTTTTTTCGATAGCCATCTTATTGGTGTGTAAAGTCTTGATGCACACGCGCCGTGTTCGCTTCGCCGCCCGAATCTACAGGGACGCTGTCATCAATAGGTGTCCTGTCTTCTTCTATTCTGACAGTAGAGTAGGATCATTGGTAGTGGCGGAATGCGCCGTATGCCTAAGCGAGTTCAAGATGTCGGACGTCGTGAAGATGCTGCCAAGATGTCAACATGTTTTCCACCACCAATGTATTGATGCCTGGTTATCCTCTCACTTGGACTGTCCCATTTGCCGCCAGAAGCTAGTTATTACTACGCCTAATGATGTTGCTAACAACATTAATCTTGTCCCAATCGAGCATCAACGAGGAGGAGTACCAAGTACAGAGTTCGAGGTGGCAGTCATGACTAGAGCGGAACAATTTGAACCTGAAAATTTTGTGGGACCCGAGGAGTACGACATCTTTGGGGTTGCTTGA 582 0.4811 MMMRLFGQVLFGVGVASLLLDGNESAEVGVGVTVGLCLIFFSIAILLVCKVLMHTRRVRFAARIYRDAVINRCPVFFYSDSRVGSLVVAECAVCLSEFKMSDVVKMLPRCQHVFHHQCIDAWLSSHLDCPICRQKLVITTPNDVANNINLVPIEHQRGGVPSTEFEVAVMTRAEQFEPENFVGPEEYDIFGVA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2357 193 SMART ring_2 91 132 IPR001841 -
Aed3g2357 193 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL6 61 147 - -
Aed3g2357 193 CDD RING-H2_EL5_like 90 133 - -
Aed3g2357 193 SUPERFAMILY RING/U-box 90 141 - -
Aed3g2357 193 PANTHER RING FINGER DOMAIN-CONTAINING 61 147 - -
Aed3g2357 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 138 IPR013083 -
Aed3g2357 193 ProSiteProfiles Zinc finger RING-type profile. 91 133 IPR001841 -
Aed3g2357 193 Pfam Ring finger domain 90 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2357 Aed-Chr3 26592471 26593052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2357 58 137 Rapid Response to Elicitors AT3G05200 45.122 6.34e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2357 K10664 - gmx:102659826 127.102