Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2349 ATGAAACTTTTGGAAACTCAGTGTGCACCGTGGGAGCCTCCTAAATTAGCGCTTCGTGGGAGGGGAAGACACGCGCACACACGCACGCACGCACACTTCAAACACACGACAAAACAAAAAAAAAAAACAAAACTTTCCTACTTTGCTTCTTCGTCTTCTTCAACGTTAATCCTGTTTTGTTCCCCTTTATATAAAGCAAACTGGGCTTTGGCCTTCTTCTCCAACCGTTTTTTTTTTCTTTTCTTTTTTCTTCACAACATGAGGAAGAAACTAGATACTCGTTTTCCTGCGGCTAGGATTAAGAAAATTATGCAAGCTGACGAGGATGTAGGGAAGATTGCAATGGCTGTGCCTCTTCTAGTTTCTAAAGCACTAGAACTATTTCTGCAAGATTTGTGTGATCGAACGTATGATATAACATTGAAGAGGGGGGCAAAGACTATGAATGTTTTTCATTTAAAACAGTGTGTGCAGACTTTTAATGTCTTTGATTTTCTAAAAGATATTGTCACCAAGGTTCCTGATTTAGGTGGTTCTGTTACGACTGGTGATGACCATACGATCACTAAGAGGAGGTTTCCAGAGGCTGGACATAGCAGTGGCAGAGGAAGGGGTAGGGGTAGAGGAAGGGGTCGTGGCCGTGGAGTTAAAACTGTAAATCAAGAGATGAGTTCACATGTCAAGTGTGAAGATGATTGTGATGTATTGAAGCAAGATGAGAACCATACTCTAAGCAATGAAAGCATGGAAACTGTGTTAGAACATGAAAAAGTTAAGCAGAGTTTCTCAGTAAGCAAACCGACCAAAGTGGTCATTCGAAATTTTGACTTAAATTTGGATCCAGATGAGAATATCGATTCATTAGACACACCAACTTCTGTCCCAACTAGTTCATCTGCAAAATCAGTGTCAGAAGAGAAACAAGAGGAATACCCTGGGTGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCTATTCAACTAGCTAACTTAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAAATGTAG 1044 0.4023 MKLLETQCAPWEPPKLALRGRGRHAHTRTHAHFKHTTKQKKKTKLSYFASSSSSTLILFCSPLYKANWALAFFSNRFFFLFFFLHNMRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLKRGAKTMNVFHLKQCVQTFNVFDFLKDIVTKVPDLGGSVTTGDDHTITKRRFPEAGHSSGRGRGRGRGRGRGRGVKTVNQEMSSHVKCEDDCDVLKQDENHTLSNESMETVLEHEKVKQSFSVSKPTKVVIRNFDLNLDPDENIDSLDTPTSVPTSSSAKSVSEEKQEEYPGWSLSDMEKMTIDPIQLANLNGRIDEDEEDYDEEM 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2349 347 Gene3D Histone, subunit A 84 172 IPR009072 GO:0046982
Aed3g2349 347 PANTHER HISTONE SUPERFAMILY PROTEIN 197 346 - -
Aed3g2349 347 MobiDBLite consensus disorder prediction 285 302 - -
Aed3g2349 347 MobiDBLite consensus disorder prediction 191 223 - -
Aed3g2349 347 PANTHER HISTONE SUPERFAMILY PROTEIN 87 192 - -
Aed3g2349 347 MobiDBLite consensus disorder prediction 280 319 - -
Aed3g2349 347 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 94 157 IPR003958 -
Aed3g2349 347 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 87 192 - -
Aed3g2349 347 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 197 346 - -
Aed3g2349 347 SUPERFAMILY Histone-fold 89 174 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2349 Aed-Chr3 26550191 26553938 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2349 87 336 CCAAT-HAP5 Transcription Factor Family AT3G12480 41.608 6.24e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Aed3g2349 CBFD_NFYB_HMF 5.2e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2349 K21752 - gmx:100814800 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2349 3 26550191 26553938 Aed3g2349 3 26550191 26553938 ECH