Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2347 ATGTCAAGCGGAGCAACACACTGGTGTTATGAATGCAGACAGCCAATTGTGCTTGATGGGAGAGATGCTGTTTGCCCTTACTGTGACGGTGGATTTGTACAAGAACTTGATGAGTTGCGAGGAACTGCACCCCACCCCAACCCCCACCCTCACCATACCGTTTCGTCACAGTCAGGAGAGTTCCATCAAATGCCTGACATTTTCGATGCTATACATGCTTTTATGGGGCAGAGGGGTTCTGACCAGAGATTCGGGCTTATGGATGCCGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAACTTTGATGTTAGAGGGAGGTCTGGTTCTTTGCCAGCAGCTCCTGAACAGAGTTGGGGTGTTTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCAACGCGGCTGCTGGCAGCCCAAGAGGTGGTCCAAGGCGTGTTGATTTCGGTGATTACTTTATGGGCTCTGGACTGGAAGAACTTATTGAGCAACTCACCATGAATGATCGGCGTGGTCCACCCCCAGCCGCACGATCTTTGATTGATGCAATGCCTACTATTAGGATAACACAGGCACATCTTCGCTCGGATTCACACTGTCCAGTTTGTAAAGAAAAATTTGAACTTGGCACCGAAGCTAGAGAAATGCCATGCAACCATATCTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCCGTTTGCCGTGTTGAGATGCCGCCTCAAGGACAGGCTAGTTCCCGTGGTACTCGAAGTTGGGGAGGAAGGAATGCCAGCAGTAGCAGCAGCAGCAGCAGTGGTGGCAATGACAGCTCCAGGGGCAGAGAGAACAGCCATCAGAGCCATGGAAGAAGAAATCCACTATCGTTTTTGTGGCCATTTCGCTCGTCTAGCTCAAACAATAATCATTATGCTGAGACTGGGGGAAGCAGTTCTTCAACCACTCCTGACCAGAATAATGGAACAAGTTATAGTGGTTGGCCCTTTGATCGCTGA 1032 0.4826 MSSGATHWCYECRQPIVLDGRDAVCPYCDGGFVQELDELRGTAPHPNPHPHHTVSSQSGEFHQMPDIFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSLPAAPEQSWGVFSSGPYLIFHGQVPGFNAAAGSPRGGPRRVDFGDYFMGSGLEELIEQLTMNDRRGPPPAARSLIDAMPTIRITQAHLRSDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVEMPPQGQASSRGTRSWGGRNASSSSSSSSGGNDSSRGRENSHQSHGRRNPLSFLWPFRSSSSNNNHYAETGGSSSSTTPDQNNGTSYSGWPFDR 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2347 343 CDD RING-H2_RNF126_like 207 248 - -
Aed3g2347 343 MobiDBLite consensus disorder prediction 39 59 - -
Aed3g2347 343 Pfam Ring finger domain 206 248 IPR001841 -
Aed3g2347 343 PANTHER OS03G0351800 PROTEIN 1 326 - -
Aed3g2347 343 SMART ring_2 207 247 IPR001841 -
Aed3g2347 343 MobiDBLite consensus disorder prediction 252 343 - -
Aed3g2347 343 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Aed3g2347 343 MobiDBLite consensus disorder prediction 255 286 - -
Aed3g2347 343 ProSiteProfiles Zinc finger RING-type profile. 207 248 IPR001841 -
Aed3g2347 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 254 IPR013083 -
Aed3g2347 343 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 326 - -
Aed3g2347 343 SUPERFAMILY RING/U-box 187 254 - -
Aed3g2347 343 MobiDBLite consensus disorder prediction 303 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2347 Aed-Chr3 26540345 26541376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2347 151 263 C3H Transcription Factor Family AT5G01980 42.609 2.09e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2347 K11982 - gmx:100813674 644.425