Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2346 ATGGCTGTCACCTTCTCAGATCTAAACACCCAAGAGGGCATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACCTATATTTCTGGAGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTGTGGAAAAGCCAGGAGACTCTTTTCCCAATGCTGCCAAGTGGTACGATGCTGTCTCTTCTCAACTTGCTCCAAGCTTCCCTGGGCACGCTCAAGGGGTAAGATTCAGTGGCGCAGGTGCTCCAGCTGAAGCTGCACCAGCCAAATCGGCTGCTACTGCTGAAGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAGGATAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAGAAAGAGAGTGGCAAGTCTTCTGTCTTGCTTGATGTTAAGCCTTGGGATGATGAGACTGACATGAAGAAGCTGGAAGAGGCTGTCCGCAGTATTGAGATTCCTGGTTTATTGTGGGGAGCATCCAAACTGGTTCCAGTGGGATATGGGATCAAGAAGTTGCAGATCATGATGACCATTGTTGATGACCTTGTCTCTGTGGATAGCCTTATTGAGGAACGCCTGACAGTTGAACCATGCAACGAGTATATCCAAAGCTGTGACATTGCTGCATTCAACAAAATTTAA 672 0.4658 MAVTFSDLNTQEGIKSLDQFLSGKTYISGDQLTKDDIKVYAAVVEKPGDSFPNAAKWYDAVSSQLAPSFPGHAQGVRFSGAGAPAEAAPAKSAATAEEDDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEIPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEERLTVEPCNEYIQSCDIAAFNKI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2346 223 SUPERFAMILY GST C-terminal domain-like 8 65 IPR036282 -
Aed3g2346 223 SUPERFAMILY eEF-1beta-like 131 223 IPR036219 -
Aed3g2346 223 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 223 - -
Aed3g2346 223 MobiDBLite consensus disorder prediction 109 131 - -
Aed3g2346 223 MobiDBLite consensus disorder prediction 77 131 - -
Aed3g2346 223 SMART EF1_GNE_2 134 223 IPR014038 GO:0003746|GO:0006414
Aed3g2346 223 CDD EF1B 132 223 IPR014038 GO:0003746|GO:0006414
Aed3g2346 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 99 107 IPR001326 GO:0003746|GO:0005853|GO:0006414
Aed3g2346 223 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 212 223 IPR001326 GO:0003746|GO:0005853|GO:0006414
Aed3g2346 223 Pfam EF-1 guanine nucleotide exchange domain 136 223 IPR014038 GO:0003746|GO:0006414
Aed3g2346 223 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 223 - -
Aed3g2346 223 Gene3D - 127 223 IPR014717 -
Aed3g2346 223 Gene3D - 5 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2346 Aed-Chr3 26535423 26537557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2346 1 223 Eukaryotic Initiation Factors Gene Family AT5G12110 73.246 7.57e-107 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2346 K03232 - gmx:100500082 360.533