Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2344 ATGAGTGATTCACATTTTGAGCTACGTGAAGACGGTGATAAATCAAAGGCTGATGATGATGAAGGGACACGTGAGAAACAAACTGCAACAACAACAACACGCGAGTGTGAATTTTGTGGCAAGAAGTTTAGCAATGGAAAAGCATTAGGTGGACACAAAAGATTCCACCTTCAAGCTCAAAGGAAAGAGAAAGAGGCTAATAATCCTAATGGCACCATCAAGTTGTCTCCAAATAATTTGAAGTTTGATGGCAAATTCAGTTGTTTTATTTGTAGGAAGGATTTCCCATCGAACAAGTCCTTGTGCGGACACATGAGATCCCATTCTGATAGGAATCGGAAGGGTATTCATCCTCCTCTATCTTCTATGGAAGAGAACAAAGGTTGTTTCAATGCAGATGAAGAACGTGCTATTAGTCTATCAAAACATTTGCAAATGCAACGAAGATGGCATGAAACCAATAACAAAGATGTAGAACGTGTTTATAGAGAAGAGGATTTTGTGGCTGCTGAGATACTTGTGTCTCTGAGTCATGACACATGGCCATGTGGTGAGTATCCTAAATTACCTGATCAAGTGGAACAACGTTGTGTGAAGAATATGGAAGGAGCTTCGACAAAAAGTATGATCATTGAAGATGTTACTAGTACTAGTGGGGTGAAAGATCATGGTAGTCACTTTGATGCATCGAATGTGTTGATCAAGAAGAGAAAGCTGATAGTGAAATTGAAGAAACCATGTTTAGATTTCAAAGATGAGAAGCCGGATGCCTACCAATGA 780 0.3949 MSDSHFELREDGDKSKADDDEGTREKQTATTTTRECEFCGKKFSNGKALGGHKRFHLQAQRKEKEANNPNGTIKLSPNNLKFDGKFSCFICRKDFPSNKSLCGHMRSHSDRNRKGIHPPLSSMEENKGCFNADEERAISLSKHLQMQRRWHETNNKDVERVYREEDFVAAEILVSLSHDTWPCGEYPKLPDQVEQRCVKNMEGASTKSMIIEDVTSTSGVKDHGSHFDASNVLIKKRKLIVKLKKPCLDFKDEKPDAYQ 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2344 259 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY 10 122 - -
Aed3g2344 259 SMART c2h2final6 34 56 IPR013087 -
Aed3g2344 259 SMART c2h2final6 86 108 IPR013087 -
Aed3g2344 259 MobiDBLite consensus disorder prediction 105 120 - -
Aed3g2344 259 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Aed3g2344 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Aed3g2344 259 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Aed3g2344 259 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Aed3g2344 259 MobiDBLite consensus disorder prediction 105 125 - -
Aed3g2344 259 Pfam C2H2-type zinc finger 34 58 - -
Aed3g2344 259 Pfam C2H2-type zinc finger 86 110 - -
Aed3g2344 259 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 10 122 IPR044653 GO:0003700
Aed3g2344 259 MobiDBLite consensus disorder prediction 1 31 - -
Aed3g2344 259 Gene3D Classic Zinc Finger 2 115 - -
Aed3g2344 259 MobiDBLite consensus disorder prediction 1 34 - -
Aed3g2344 259 SUPERFAMILY beta-beta-alpha zinc fingers 35 108 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2344 Aed-Chr3 26529493 26530272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2344 36 122 C2H2 Transcription Factor Family AT2G26940 35.714 3.76e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed3g2344 zf-C2H2_6 0.0011 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2344 - - aprc:113874531 150.984