Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2343 ATGTTTGTGATCACTGCATCTAACAATATTCTTCACTTCAAAACTGAATTTAAATGGGTGGATGATAGTCTTTTAAAGAAAGGGCCATGGACAGCTGAAGAGGATGAAATATTGGCAGCGTATGTGACAAACAATGGAGTGGGAAATTGGAATATTGTGAGAAAGAACACTGGACTAGCTCGTTGTGGAAAAAGCTGCCGATTAAGATGGACTAATCATCTCCGACCCGACTTGAAAAAAGGTGCATTTACTGATGAAGAACAACGCAAAATCATTGAACTCCATGCTTTATACGGAAATAAATGGGCTAGAATGGCACAAGAGTTGCCGGGGCGTACAGACAATGAAATAAAGAACTTTTGGAACACAAGACAAAAGAAAAGGAAACGTGCTGGTTTACCACTGTACCCAGATGACATAAAACCAGTGTTGAATGCTGACAACCCACAAAGTAGTAGTCTAAATGCTTTCACACAGCATGATGCTAATGACGGTGACTCACAAGAAGAAGCAGAAGAAGCAGAAGAAGCAGGAGGCACATCAGCATCATCATTTCACAATGTACCAGAAATGGTATTCAACAATTACAAGCAGCTGGTGGTTAAAAAACATCATCAATTGTGTACACCTGCACCAATTTCTGTGATACCCGAAGACAACAGCACCTTTGAACAAGATGGTTGTTCAGGTTCAGAGATTAATAACCACCAAATTATGCATCCCCCGATATCTATGTTGTATAATGTTTATAACAGAAGCAGTGATAAGTTTCAGGGTGATGACTACAAGTCTTCCTCAATAGTATCAGATGAGCTGCTTCCATTCCCATCATTTGATCATGATGACTACTCATTATTGAGAGATGAGGCTCAGACTACTCAGAACTATTATTATGAATCACGTTCTCCACGCAGCAATGGGTATTTGGAATCCATGTTTTTCCCACCTTTGGAAGGAAACAAAGACATTAATTCTCAAGAGAAGGAGCAGAGAAACCTTGTTGTAAACCAAGATGATGATTCTGCTTTAGGGGTAGAGAAAGAGATCAATATTTATCATGACAAGAATGATGATCAATATGCTCCCAAGGATTCTTTATTCAGCATTATCTACCCCTTTTTTCCACGCTAA 1131 0.3926 MFVITASNNILHFKTEFKWVDDSLLKKGPWTAEEDEILAAYVTNNGVGNWNIVRKNTGLARCGKSCRLRWTNHLRPDLKKGAFTDEEQRKIIELHALYGNKWARMAQELPGRTDNEIKNFWNTRQKKRKRAGLPLYPDDIKPVLNADNPQSSSLNAFTQHDANDGDSQEEAEEAEEAGGTSASSFHNVPEMVFNNYKQLVVKKHHQLCTPAPISVIPEDNSTFEQDGCSGSEINNHQIMHPPISMLYNVYNRSSDKFQGDDYKSSSIVSDELLPFPSFDHDDYSLLRDEAQTTQNYYYESRSPRSNGYLESMFFPPLEGNKDINSQEKEQRNLVVNQDDDSALGVEKEINIYHDKNDDQYAPKDSLFSIIYPFFPR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2343 376 Gene3D - 26 79 - -
Aed3g2343 376 MobiDBLite consensus disorder prediction 132 185 - -
Aed3g2343 376 MobiDBLite consensus disorder prediction 145 162 - -
Aed3g2343 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 129 IPR017930 -
Aed3g2343 376 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 23 341 - -
Aed3g2343 376 Gene3D - 82 160 - -
Aed3g2343 376 SMART sant 79 127 IPR001005 -
Aed3g2343 376 SMART sant 26 76 IPR001005 -
Aed3g2343 376 ProSiteProfiles Myb-like domain profile. 22 74 IPR001005 -
Aed3g2343 376 Pfam Myb-like DNA-binding domain 27 74 IPR001005 -
Aed3g2343 376 Pfam Myb-like DNA-binding domain 80 123 IPR001005 -
Aed3g2343 376 ProSiteProfiles Myb-like domain profile. 75 125 IPR001005 -
Aed3g2343 376 CDD SANT 82 123 IPR001005 -
Aed3g2343 376 CDD SANT 29 74 IPR001005 -
Aed3g2343 376 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Aed3g2343 376 SUPERFAMILY Homeodomain-like 26 121 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2343 Aed-Chr3 26525968 26528002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2343 24 142 MYB Transcription Factor Family AT5G55020 77.311 1.68e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g2343 Myb_DNA-binding 9.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2343 K09422 - gsj:114385238 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2343 3 26525968 26528002 Aed3g2343 3 26525968 26528002 ECH