Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2340 ATGGCAATTGCAGCCCCAGGGCAACTGAACGTGAATGAAGTACCCATTTGGGGATCCAGAAGTGTTGATTGCTTCGAGAAGTTGGAGCAAATTGGCGAGGGCACATATGGTCAGGTTTACATGGCTAAAGATATCAAAACTGGTGAAATTGTTGCTCTGAAGAAAATACGAATGGACAATGAGAGAGAGGGGTTTCCCATAACTGCTATACGAGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTGACCAAGCTGAAAGAAATTGTGACTTCTCAAGATGGTAACAAATATAAAGGTGGCATCTATATGGTCTTTGAATACATGGACCATGATTTAACAGGTCTTGCCGACCGACCTGGGATGAGATTTACAGTTCCCCAAATTAAGTGTTACATGAGACAGCTGTTGACTGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATCAAAGGCTCAAATCTTCTTATAGACAATGAAGGAAATCTCAAGCTTGCAGATTTTGGACTGGCACGATCATTTTCTAATGACCAAAATGCAAATCTTACAAATCGTGTCATTACATTATGGTACAGACCACCTGAGTTGCTGCTAGGAACAACAAAGTATGGGCCGGCTGTGGATATGTGGTCTGTTGGGTGCATTTTTGCTGAGCTTCTTCAAGGGAAGCCTATCTTTCCTGGAAAAGATGAGTTTATGCCAACAAGGCCGTTGAAAAGACGTTTGAGGGAAGTTTTCAGGCATTTTGATCATCATGCTCTGGAATTGTTGGAAAAGATGTTGACACTTGATCCAGCTCAGAGAATTACTGCAAAAGATGCACTTGATGCTGAGTATTTCTGGACAGATCCATTGCCATGCGATCCCAAGAGTTTACCCAAATACGAGTCATCACATGAGTTTCAAACAAAGAAAAAGCGCCAACAACAGCGGCAAAATGAAGAAATGGCTAAGCGTCAGAAAGGGCAACACCCACAGCAGCACACTCGACTTCCCCCCATTCAGCAGTCTGGGCAACATGCCCAAATGCGGTCAGGACCAAACCAACCAATTCATGGCTCTCAACCCCAAGTTGCTGCAGGACCTGCTCATCATTATGGGAAACCTCGAGGTCCATCTGGTGGTGGACCAGGAAGATATCCCCCCAATGGGAACCCAGCTGGAGGATACAATAACCCAAATCGAGGTCAAGGTGGTGGTGGTTATGGCAGTGGACCTTATCCTCCTCAAGGGCGGGGGGCGACTTATGGTTCCAATAGTATGCCTGGTGGTGGTCCTCGTGGTGGTGGTGGTGGCAGTGGCTATGGAGTTGGAGCTCCAAATTATCCCCAACAAGGTGGTCAGTATGGGGGCTCAGCGGCTGGTCGTGGCTCAAATATGATGGGTGGAAACCGCAATCAACAACAGTATGGTTGGCAGCAGTAA 1437 0.4558 MAIAAPGQLNVNEVPIWGSRSVDCFEKLEQIGEGTYGQVYMAKDIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVTKLKEIVTSQDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDQNANLTNRVITLWYRPPELLLGTTKYGPAVDMWSVGCIFAELLQGKPIFPGKDEFMPTRPLKRRLREVFRHFDHHALELLEKMLTLDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEEMAKRQKGQHPQQHTRLPPIQQSGQHAQMRSGPNQPIHGSQPQVAAGPAHHYGKPRGPSGGGPGRYPPNGNPAGGYNNPNRGQGGGGYGSGPYPPQGRGATYGSNSMPGGGPRGGGGGSGYGVGAPNYPQQGGQYGGSAAGRGSNMMGGNRNQQQYGWQQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2340 478 MobiDBLite consensus disorder prediction 330 359 - -
Aed3g2340 478 MobiDBLite consensus disorder prediction 463 478 - -
Aed3g2340 478 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Aed3g2340 478 Pfam Protein kinase domain 25 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2340 478 PANTHER CYCLIN-DEPENDENT KINASE C-2 5 235 - -
Aed3g2340 478 ProSiteProfiles Protein kinase domain profile. 25 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2340 478 PANTHER CELL DIVISION PROTEIN KINASE 5 235 - -
Aed3g2340 478 SMART serkin_6 25 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2340 478 CDD STKc_CDK9_like 25 284 - -
Aed3g2340 478 Gene3D Phosphorylase Kinase; domain 1 12 111 - -
Aed3g2340 478 MobiDBLite consensus disorder prediction 295 478 - -
Aed3g2340 478 SUPERFAMILY Protein kinase-like (PK-like) 17 292 IPR011009 -
Aed3g2340 478 PANTHER CELL DIVISION PROTEIN KINASE 235 414 - -
Aed3g2340 478 Gene3D Transferase(Phosphotransferase) domain 1 112 324 - -
Aed3g2340 478 PANTHER CYCLIN-DEPENDENT KINASE C-2 235 414 - -
Aed3g2340 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 149 161 IPR008271 GO:0004672|GO:0006468
Aed3g2340 478 MobiDBLite consensus disorder prediction 297 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2340 Aed-Chr3 26504959 26508971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2340 1 478 Core Cell Cycle Gene Families AT5G10270 72.137 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Aed3g2340 Pkinase 7.4e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2340 K08819 - gmx:100795971 787.334