Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2339 ATGGGAAACTCCTGCAGAAAGCCAGTGGCTCATGTTTCTACAAGTTTCTTTGGAAGTGCAAAGTCTCAAAGTAAGACAAAACAAAACTCAAATTCTTCTAAACGAAAAGTTCCTTTAAGAACATCAGCATCAAATGTTGACAAACTCATTTCCAATAGCCTTAAGTCCTTCACAGTGAATGATCTAAGAGAGGCCACTAAGAACTTCAGGCATGAAAACTTAATTGGAGAAGGAGGGTTTGGGTTTGTCTACAAGGGATGGATAGATGAGAACACCTGTGCTCCAACAAAACCAGGGACTGGAATTGTAGTGGCCATCAAGAAACTTAAACCAGAAAGCTTTCAAGGCCACAGAGAATGGCTGGCAGAAGTCAATTATCTAGGCCAACTTCACCATGAAAATATGGTGAAACTTATTGGTTACTGCTCAGATGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCAGAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAGGTGTTCAACCTATTCCCTGGATTACACGGATCAACGTTGCAGTTGATGTTGCAAGAGGATTAACATTTTTACATTCCCTTGATGCAAATGTTATATATCGTGATTTAAAGGCTTCCAACGTCCTACTTGATTCGGATTTCAATGCGAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACTGGAGATAACACTCATGTTTCAACCAGAGTTATTGGTACTCATGGTTATGCTGCACCAGAGTATGTAGCTACAGTCATTCCCACAAGTCAGCTTCAAGTAGTAACAAACCATGAGCTTCCTTTCTCTATGTGGACTAATGCTTCTGCATCCCAACAAGTGCTTTGTTCTTTCAATATTGCCGCTAAGTGA 876 0.3995 MGNSCRKPVAHVSTSFFGSAKSQSKTKQNSNSSKRKVPLRTSASNVDKLISNSLKSFTVNDLREATKNFRHENLIGEGGFGFVYKGWIDENTCAPTKPGTGIVVAIKKLKPESFQGHREWLAEVNYLGQLHHENMVKLIGYCSDGKNRLLVYEFMQKGSLENHLFRKGVQPIPWITRINVAVDVARGLTFLHSLDANVIYRDLKASNVLLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTHGYAAPEYVATVIPTSQLQVVTNHELPFSMWTNASASQQVLCSFNIAAK 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2339 291 Pfam Protein tyrosine and serine/threonine kinase 72 255 IPR001245 GO:0004672|GO:0006468
Aed3g2339 291 ProSiteProfiles Protein kinase domain profile. 69 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2339 291 PANTHER OS01G0588500 PROTEIN-RELATED 16 258 - -
Aed3g2339 291 MobiDBLite consensus disorder prediction 17 41 - -
Aed3g2339 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Aed3g2339 291 SMART serkin_6 69 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2339 291 SUPERFAMILY Protein kinase-like (PK-like) 36 257 IPR011009 -
Aed3g2339 291 ProSitePatterns Protein kinases ATP-binding region signature. 75 108 IPR017441 GO:0005524
Aed3g2339 291 PANTHER TYROSINE KINASE FAMILY PROTEIN 16 258 - -
Aed3g2339 291 Gene3D Transferase(Phosphotransferase) domain 1 155 264 - -
Aed3g2339 291 Gene3D Phosphorylase Kinase; domain 1 43 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2339 Aed-Chr3 26501266 26504485 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2339 47 253 Glycoside Hydrolase AT3G07070 53.302 1.59e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Aed3g2339 PK_Tyr_Ser-Thr 3.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2339 - - gmx:102664409 471.47