Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2338 ATGAGTCAGCCTAAGATTAAGCGCCGAGTTGGTATATATGAGGTGGGGAGAACCATTGGCGAGGGTACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGAGATCCTGTGGCTCTTAAAATTCTTGACAAGGAGAAGGTGCTCAAGCACAAGATGGCTGAGCAGATCAGGAGAGAGGTAGCTACAATGAAACTAATCAAGCATCCAAATGTTGTTCGATTGTATGAGGTCATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTAACTGGGGGGGAGCTCTTTGACAAAATTGTAAACCATGGCAGGATGAGTGAAAATGAAGCACATACTTATGGGAACCTTAAAGTTTCTGATTTTGGTTTGAGTGCCCTCTCCCAGCAAGTTAGGGATGATGGACTTCTTCATACTACATGTGGCACTCCTAATTATGTTGCTCCTGAGGCTATGATGGGGCAACTGCAGACTTGTGGTTACTTGCCTTTTGACGACCCTAATCTTATGAACCTGTACAAAAAAATCTCAGCTGCTGAATTTACTTGCCCCCCATGGCTTTCTTTCAGTGCCAGGAAATTGATTACTCGAATCTTGGATCCTGACCCCACCACTCGTATCACTATACCTGAGATTTTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTTGAGGAGAACGGGGAAACCAACCTCGATGATGTTGAAGCTGTCTTTAAAGATTCTGAAGAGCACCATGTGACGGAGAAGAAAGAAGAGCATCCAACAGCAATGAATGCATTTGAGTTAATTTCCATGTCCAAAGGGCTGAATCTTGAGAACTTGTTTGAAACAGAGCAGGGATTCAAAAGGGAAACAAGATTCACATCAAAATCACCCGCAGATGAGATAATCAACAAGATTGAGGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGGAAGGGCAACCTTAATATTGCCACAGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTTGAGGTACGGAAGGCAAAAGGAGATACATTGGAGTTCCATAAGTCTCTGCTTGCCACTTCAAAAATAACTGTTCTATTGTCAATTTTAACAATAATTAAAGAAGCTTATTATATCAGCAGTTGGATGGGAATAAGAGCATCAGAGTTTTTCATTGTCACTGCCAACTTTTTTTTATAA 1236 0.4102 MSQPKIKRRVGIYEVGRTIGEGTFAKVKFARNSETGDPVALKILDKEKVLKHKMAEQIRREVATMKLIKHPNVVRLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSENEAHTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEAMMGQLQTCGYLPFDDPNLMNLYKKISAAEFTCPPWLSFSARKLITRILDPDPTTRITIPEILDDEWFKKDYKPPVFEENGETNLDDVEAVFKDSEEHHVTEKKEEHPTAMNAFELISMSKGLNLENLFETEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNIATEIFQVAPSLHMVEVRKAKGDTLEFHKSLLATSKITVLLSILTIIKEAYYISSWMGIRASEFFIVTANFFL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2338 411 Gene3D Kinase associated domain 1, KA1 257 381 - -
Aed3g2338 411 Pfam Protein kinase domain 13 116 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2338 411 CDD CIPK_C 264 367 - -
Aed3g2338 411 PANTHER - 2 116 - -
Aed3g2338 411 PANTHER - 115 371 - -
Aed3g2338 411 ProSiteProfiles NAF domain profile. 258 282 IPR018451 GO:0007165
Aed3g2338 411 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 115 371 - -
Aed3g2338 411 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 2 116 - -
Aed3g2338 411 ProSiteProfiles Protein kinase domain profile. 13 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2338 411 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Aed3g2338 411 SUPERFAMILY Protein kinase-like (PK-like) 11 241 IPR011009 -
Aed3g2338 411 Pfam NAF domain 260 319 IPR004041 GO:0007165
Aed3g2338 411 Gene3D Transferase(Phosphotransferase) domain 1 116 227 - -
Aed3g2338 411 Gene3D Transferase(Phosphotransferase) domain 1 5 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2338 Aed-Chr3 26485871 26490262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2338 5 363 CBL-interacting serine-threonine protein kinases AT2G26980 67.568 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Aed3g2338 Pkinase 7.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2338 - - gmx:100794566 672.159