Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2332 ATGGCTAAGAAACGAAAGACTCGATCCTCCGACCCCGAACCCATCAAAATCGTCGAACCACAGCAACAGGAGCAAGAGCCAGTGGAGCTCAACCAGCAACAACCCAACCCCAAACCAACCCTAGAAGGCCCCAACACCATGGCCATCGACGAGCCGATACAGGAAGAAGAAGAAGAACAACAACAACAACCGCAAAACGCCGAAGGCGAAGAGGAAGCAGAGGAACAACAAGAGGCGCAGGAACCGAAAACCCTAGAAGAGCAACACGACCCAGAAGCCCTTCAAATTGTAATCCACGGCGAAGCGAACGGTGCAGATGAAGGAAACAACGATGAAGATGAAGATGAGGATCTCACTCTGGAGGATGAGCCCGTGGAGAAGCTTCTGGAACCGTTCACGAAGGAGCAGCTGCACTCTCTTGTCAAACAGGCCTTGGAGAGGTTCCCCGAATTCGTCGATAGCGTGCGCCAGCTCGCCGATGTGGACCCCGCGCACCGGAAAATCTTCGTCCACGGCCTCGGCTGGGACGCCACCGCCGAAACCCTAACCACCGTGTTCGGGAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAGGTCTCTGGCAAATCCAAGGGTTACGCCTTCATTTTGTTCAAGCACAGGGATGATGCTCGCAGGGCGCTGAAACACCCCCAGAAGAAGATCGGGAACCGCACCACCTCGTGCCAGCTGGCCTCCGCCGGTCCTGTTCCAGCGCCACCGCCAAACGCGACCCCGGTGTCTGAGTACACCCAGAGGAAGATTTTTGTGAGCAATGTGAATGCTGAGATTGATCCCCAGAAGCTGCTTGAATTCTTCAAGCAGTATGGGGAGGTTGAGGATGGTCCTCTTGGTTTGGACAAGAACACTGGGAAACCTAAGGGTTTTGCGCTATTTGTGTATAGGTCTGTGGAAAGTGCTAAGAAGGCTCTGGAAGAACCTCATAAGAACTTTGAGGGACATACTTTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGGAGCAAAGGGTACCATCAGTATCACCATCAGCAGCATTCTCACTCTCACCATCACCATCATCAGCCTCATTATCAGAGGAAGGAGAAGAACAAGTATTCCTCTGGCGGTGGTGGGCCATCTCATGCAAGTGGTCATTTAATGGCACCCTCGGCCTCTGCTGTGGGGGGTTTCAACCCTGGTGTGCCGACACAAGGGTTGAATCCGGCGCTTGGACAGGCATTGACTGCGTTGTTGACTAATCAGGGGGCTGGATTGGGGCTTGGGAATCTGCTTGGAGGGCTTGGTGGTGCGCCGGTTAACCAGGCTGCACCGCCTGCCCCATATGGGACTCAGCCTGTTATGGGCTATGGGAACCAACCAGCAATGCAACCTGGATACCAGAATCCTCAAATGGGACAAAGCAGTGGTGTGAGACCTCATCCTGGCGCTGGTGCTCCTTACATGGGTCATTAG 1482 0.5412 MAKKRKTRSSDPEPIKIVEPQQQEQEPVELNQQQPNPKPTLEGPNTMAIDEPIQEEEEEQQQQPQNAEGEEEAEEQQEAQEPKTLEEQHDPEALQIVIHGEANGADEGNNDEDEDEDLTLEDEPVEKLLEPFTKEQLHSLVKQALERFPEFVDSVRQLADVDPAHRKIFVHGLGWDATAETLTTVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARRALKHPQKKIGNRTTSCQLASAGPVPAPPPNATPVSEYTQRKIFVSNVNAEIDPQKLLEFFKQYGEVEDGPLGLDKNTGKPKGFALFVYRSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGSKGYHQYHHQQHSHSHHHHHQPHYQRKEKNKYSSGGGGPSHASGHLMAPSASAVGGFNPGVPTQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAAPPAPYGTQPVMGYGNQPAMQPGYQNPQMGQSSGVRPHPGAGAPYMGH 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2332 493 Gene3D - 158 244 IPR012677 -
Aed3g2332 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 340 IPR000504 GO:0003723
Aed3g2332 493 MobiDBLite consensus disorder prediction 1 89 - -
Aed3g2332 493 CDD RRM_RBM24_RBM38_like 262 337 - -
Aed3g2332 493 CDD RRM_RBM24_RBM38_like 166 241 - -
Aed3g2332 493 SUPERFAMILY RNA-binding domain, RBD 155 247 IPR035979 GO:0003676
Aed3g2332 493 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 1 480 - -
Aed3g2332 493 MobiDBLite consensus disorder prediction 51 77 - -
Aed3g2332 493 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 480 - -
Aed3g2332 493 MobiDBLite consensus disorder prediction 342 394 - -
Aed3g2332 493 SMART rrm1_1 167 239 IPR000504 GO:0003723
Aed3g2332 493 SMART rrm1_1 263 335 IPR000504 GO:0003723
Aed3g2332 493 MobiDBLite consensus disorder prediction 463 493 - -
Aed3g2332 493 SUPERFAMILY RNA-binding domain, RBD 246 361 IPR035979 GO:0003676
Aed3g2332 493 Gene3D - 251 384 IPR012677 -
Aed3g2332 493 MobiDBLite consensus disorder prediction 24 41 - -
Aed3g2332 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 332 IPR000504 GO:0003723
Aed3g2332 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 168 235 IPR000504 GO:0003723
Aed3g2332 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 166 243 IPR000504 GO:0003723
Aed3g2332 493 MobiDBLite consensus disorder prediction 464 478 - -
Aed3g2332 493 MobiDBLite consensus disorder prediction 348 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2332 Aed-Chr3 26450491 26455244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2332 258 341 C2H2 Transcription Factor Family AT2G19380 29.762 2.56e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2332 K12741 - gmx:100783742 711.064