Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2285 ATGGATTTTGAACTGAGAAGAGCGAGAGAGAAGCTAGAGAAAGAGCAGAGGGAGAGGAAGGAACGAGCGAGATTGAAACTGCAGAAGGAAAAAAAGGCCAAAGAAGAGGCCCAGAAGCAAAAGGAAGCCATCGAAGCTGTTCAAAGAACTCGTCGCCTTGATGCCGCCCAAGCCCAACTCAAGGCTGACCAACAGGTGCAAGAAAACCTACTTGCTGGCAGAGGAATAGTATTTTATCGGCTACTAGAGGCTTGTTTCTATGAAGGTGGTGGAGATAAGATCAAGCTACCTCCTTCTTGCTTTGCAGGACTGTCTGACCAGGGTGCTTTTGATAAGGTACAGGGACCCTTGTACTTTCAGTTGTCATTAGTTCATGAAGAAAGCTCTTTCATCCAAGCTACTGATAAAGAGAAACAGGGGAGGACCACCCATTCCGGAGTTTTAGAATTCACTGCTGATGAAGGTTCAGTGGGTCTTCCTCCTCATGTATGGAATAATTTGTTTTCTGATGGCACTCCAAAATCTCCATTAGTTGAAGTCCGCTATGTTTGGCTTCCAAAAGGGACATATGCAAAACTTCAACCTGAAAGAGTAGGATTTTCTGACTTGCCAAATCATAAGGCTATCCTCGAAACATGTCTTCGGCAGCATGCTACTCTTTCTCAAGGTGACATTTTAACTGTAAACTATGGAGAACTTGCTTACAAATTAAGGGTCCTTGAGTTAAAACCTTCTTCAAGTGTATCTGTTTTAGAAACAGATATTGAAGTTGACATAGTTAATCCCGATACATCTTCAGAAAAAAAGACAGATGAGCATGTTTTAATGCCACTTTTATTTGGAGTGTCACAAATTGGAATTGCAGAAGAAGGAAAGTTTGTTTATTACAAATTTTCCATAGACAATGTCACATGGGAGATACTATCTTCTGGGAATACTTGTATTGAGGTAAAATTAGAATCAGAGACAGATGGGGGGGACACTGATCTTTTCATCTCCAGACATCCTCTCATATTTCCTACACGACACCAGCACGAGTGGTCTTCTCATGATATTGGCTCAAAAACATTGATTCTCAGCTCTAAAGATAAAAACATGGGTGAAGGGACTTACAGCATTGGTGTATATGGCTTCAAGGGAATTACGAAATATAAAATATCAGTCATGGTCCAGGATAATTTCAACCAAAAAGTTGGTCTGCAAGCATCATCATCTTCTGTGTCATCTATGGAACTGGATACTGAACAATGTAGGAACTGCAAGCATTATATACCCAATAGAACTATTGCACTACATGAAGCTTACTGTAGCAGGCATAATGTTGTCTGTCAGCGTGCAGGCTGTGGAGTTGTTCTTAGGATTGAGGAGTCCAAGAACCACATTCACTGTGACAAGTGTGGTCAGGCTTTCCAGCAGGCAGAATTAGAAAAGCACATGAAGGTTTTTCATGAGCCACTTCACTGCCCTTGTGGAATAATCCTCGAGAAAGAGCAAATGGTGGAGCATCAAGCTTCAGTTTGCACCCTGCGTCTAATTTCTTGCCGGTTTTGTGGTGATATGGTTCAAGCTGGGAGTTCTGCCATGGATGTTCGTGACAGATTAAGAGGATTGTCTGAGCATGAGAGTATTTGCGGTTCTAGGACTGCCCCCTGTGATTCTTGTGGGCGTTCTGTGATGTTGAAGGACATGGACATTCACCAGATTGCTGTTCATCAAAAGGGCTAA 1725 0.4232 MDFELRRAREKLEKEQRERKERARLKLQKEKKAKEEAQKQKEAIEAVQRTRRLDAAQAQLKADQQVQENLLAGRGIVFYRLLEACFYEGGGDKIKLPPSCFAGLSDQGAFDKVQGPLYFQLSLVHEESSFIQATDKEKQGRTTHSGVLEFTADEGSVGLPPHVWNNLFSDGTPKSPLVEVRYVWLPKGTYAKLQPERVGFSDLPNHKAILETCLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVNPDTSSEKKTDEHVLMPLLFGVSQIGIAEEGKFVYYKFSIDNVTWEILSSGNTCIEVKLESETDGGDTDLFISRHPLIFPTRHQHEWSSHDIGSKTLILSSKDKNMGEGTYSIGVYGFKGITKYKISVMVQDNFNQKVGLQASSSSVSSMELDTEQCRNCKHYIPNRTIALHEAYCSRHNVVCQRAGCGVVLRIEESKNHIHCDKCGQAFQQAELEKHMKVFHEPLHCPCGIILEKEQMVEHQASVCTLRLISCRFCGDMVQAGSSAMDVRDRLRGLSEHESICGSRTAPCDSCGRSVMLKDMDIHQIAVHQKG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2285 574 Gene3D - 187 260 - -
Aed3g2285 574 Coils Coil 5 50 - -
Aed3g2285 574 Gene3D - 78 185 IPR042299 -
Aed3g2285 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 534 IPR013083 -
Aed3g2285 574 PANTHER UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN 1 573 - -
Aed3g2285 574 Gene3D - 282 389 - -
Aed3g2285 574 Pfam Ubiquitin fusion degradation protein UFD1 91 262 IPR004854 GO:0006511
Aed3g2285 574 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 573 IPR004854 GO:0006511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aed3g2285 UFD1 6.3e-47 CL0402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2285 - - gmx:100777384 1001.12