Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2274 ATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTCAACAACAACTCTGGTGCCCAAATGCGCAGCAGCAATGATAGAAGGGTACCTACTGTCACTACCAGCAATAGCATCCCTCAGGAACATCACTACAGCCACCACAACCCCACCGACACTTGCAGTGTTAGGGATAAAATCATGGCACATCCACTTTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCCTCAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGCTTAGAGGAGTCATGTGCAAAATGTGAATCCTTCAATGGAAGGACAGGAAGTGGTTCAATAGGTGAAGATCCAGCTCTGGACCAGTTCATGGAGGCCTACTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACAAAACCCTTTAAAGAAGCCATGCTTTTCTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCTTCACAGAATGAGGTTGATGTTCATGAAAACAACCTAGATTCTCAAGCTGAAGACCGGGAACTGAAAGTCCAGCTTTTGCGCAAGGAGCCTCAAGAAGGAGTTTCTGAAGAAGAAAAAGAATGGAAAGAATCTCAAAAGCAGGCACTTGCAGAATCCACAGGGCTAGATCTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAGCCTTCTGAGGATATGCAATTTGCGGTGATGGATGCAACTAACTACTACATGGAAAATGTCATGTGCAAGCCATTTCCAATGGATGGCATGCCTATGCTTCTTTAA 828 0.4408 MDMMNMETNRKFLSLPLNNNSGAQMRSSNDRRVPTVTTSNSIPQEHHYSHHNPTDTCSVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVASLEESCAKCESFNGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDSQAEDRELKVQLLRKEPQEGVSEEEKEWKESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2274 275 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 210 266 - -
Aed3g2274 275 Pfam KNOX1 domain 59 100 IPR005540 GO:0003677|GO:0005634
Aed3g2274 275 MobiDBLite consensus disorder prediction 15 36 - -
Aed3g2274 275 CDD homeodomain 213 243 IPR001356 GO:0003677
Aed3g2274 275 SUPERFAMILY Homeodomain-like 211 253 IPR009057 -
Aed3g2274 275 Gene3D - 190 250 - -
Aed3g2274 275 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 210 266 - -
Aed3g2274 275 ProSitePatterns 'Homeobox' domain signature. 217 240 IPR017970 GO:0000981|GO:0006355
Aed3g2274 275 ProSiteProfiles 'Homeobox' domain profile. 211 242 IPR001356 GO:0003677
Aed3g2274 275 Pfam Homeobox KN domain 211 238 IPR008422 GO:0003677|GO:0006355
Aed3g2274 275 SMART KNOX2_2 107 158 IPR005541 GO:0003677|GO:0005634
Aed3g2274 275 Pfam KNOX2 domain 110 156 IPR005541 GO:0003677|GO:0005634
Aed3g2274 275 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 198 - -
Aed3g2274 275 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 198 - -
Aed3g2274 275 SMART KNOX1_2 57 101 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2274 Aed-Chr3 26114751 26119232 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2274 59 269 Homeobox Transcription Factor Family AT1G62360 53.333 1.32e-78 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2274 - - gmx:100791704 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2274 3 26114751 26119232 Aed3g2274 3 26114751 26119232 ECH