Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2247 ATGCCAGAAAACAGACAGGTTCAGAGGAATGCTGATTCTACACCATCTGGTGACAACATTGAAGAAGCAATTCGACGTTTGAAAATCAATGATAATTGGGATAGAGATGCTGCAGCTCAATCTACCCAATATCCGGATCGGCCCGGTCTACCATATGGAGGAGGATTTCCTGCATGGTCAGCAGTACCAAGAATGTCGTATTTATCTGGACAAGGCCTTCAATCTTATGTGCCTCCTTTTCTGTCCTCTTCACAAGGCGTTATACCTGTGCAGAGCTGGAACAACTACATGGGAAATATGAACCCTGCAATGCCGACTGGTTTTCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGTGAGTCACTCTTTGGTGGGCAGGGGCAAGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGGCCAACATGCAAATTTGATCATCCAGTTTTGACAATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGTCTGTACTTGATACTCCTCTCATTAGTAATCCTAGAGGGTTATCAAATGCACAACCACCTGAGACATCTCCTAAATTATCAAGTGACAACATCAACAAGCTTCAGCATTCTGATGCAAAAGCTGCTGCTGCTGAAGATTCATCCAAACAAGCTGATACTACATCAAATTCCTTCCCCCCAGCCTCCTCAGAGCCGTTACACGACTAA 711 0.4402 MPENRQVQRNADSTPSGDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGLPYGGGFPAWSAVPRMSYLSGQGLQSYVPPFLSSSQGVIPVQSWNNYMGNMNPAMPTGFLGSNLVYDFMNLGESLFGGQGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMSVLDTPLISNPRGLSNAQPPETSPKLSSDNINKLQHSDAKAAAAEDSSKQADTTSNSFPPASSEPLHD 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2247 236 MobiDBLite consensus disorder prediction 215 230 - -
Aed3g2247 236 Gene3D - 126 215 - -
Aed3g2247 236 PANTHER PROTEIN PHOSPHATASE RELATED 69 219 - -
Aed3g2247 236 MobiDBLite consensus disorder prediction 1 20 - -
Aed3g2247 236 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 153 IPR000571 GO:0046872
Aed3g2247 236 ProSiteProfiles Zinc finger C3H1-type profile. 127 155 IPR000571 GO:0046872
Aed3g2247 236 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 69 219 - -
Aed3g2247 236 MobiDBLite consensus disorder prediction 174 236 - -
Aed3g2247 236 MobiDBLite consensus disorder prediction 1 17 - -
Aed3g2247 236 MobiDBLite consensus disorder prediction 174 203 - -
Aed3g2247 236 SUPERFAMILY CCCH zinc finger 128 153 IPR036855 GO:0046872
Aed3g2247 236 SMART c3hfinal6 127 154 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2247 Aed-Chr3 25886887 25892018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2247 49 225 C2H2 Transcription Factor Family AT2G32930 29.310 5.04e-11 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed3g2247 zf-CCCH 2.3e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2247 - - vra:106765262 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2247 3 25886887 25892018 Aed3g2247 3 25886887 25892018 ECH