Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2246 ATGCGCAAAGGGAGAGCCACCGCCGCCACCGTTGTGGATCCGTCGGCGGAGCGGGACTCTCCGGCGAAGGAGACGCGCTTCCGCGGCGTGAGGAAGCGCCCCTGGGGCCGATTCGCGGCCGAGATTCGAGATCCGTGGAAGAAGCAGCGCGTGTGGCTCGGCACGTTCGATTCCGCCGAGGATGCCGCACGGGCCTACGACAAGGCGGCCCGATCCTTCCGCGGGCCCAAGGCCAAGACCAATTACCCCTTCCCCGAGGCGGCGGCGGACCACTCCTCGCAGCAGCAGCAGCAGCAGATTCCGCTATACCAGGCCCACGGGCTTTCGAAGTTCGAGGCCGCCGTCCAGGTGAACCGGCCCACCACAAGCGGCATGAGCAGCACTGTTGAGTCCTTCAGCGGGCCTAGGGTTCCGTCCTCCTCCACCTTCCAACGCAAGCCCCTTGTTGTTAACCCTATCATCCCTTTCGACGATGATTGCCACAGCGATTGCGACTCTTCTTCCTCCGTCGTCGACGACGAAGACTGCGTCCTCACCTCCTCCTTCCGGCAACCGTTGCCCTTCGATCTAAACCTCCCGCCGCCCGATGCCGCCGCCGCCGCCGAAGATGACGACGACGACCTCCCCGCCACCGCGCTGTGCCTCTGA 648 0.6559 MRKGRATAATVVDPSAERDSPAKETRFRGVRKRPWGRFAAEIRDPWKKQRVWLGTFDSAEDAARAYDKAARSFRGPKAKTNYPFPEAAADHSSQQQQQQIPLYQAHGLSKFEAAVQVNRPTTSGMSSTVESFSGPRVPSSSTFQRKPLVVNPIIPFDDDCHSDCDSSSSVVDDEDCVLTSSFRQPLPFDLNLPPPDAAAAAEDDDDDLPATALCL 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2246 215 MobiDBLite consensus disorder prediction 184 208 - -
Aed3g2246 215 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Aed3g2246 215 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Aed3g2246 215 Gene3D AP2/ERF domain 25 84 IPR036955 GO:0003700|GO:0006355
Aed3g2246 215 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 21 189 - -
Aed3g2246 215 MobiDBLite consensus disorder prediction 122 141 - -
Aed3g2246 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 21 189 - -
Aed3g2246 215 MobiDBLite consensus disorder prediction 1 28 - -
Aed3g2246 215 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Aed3g2246 215 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Aed3g2246 215 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
Aed3g2246 215 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Aed3g2246 215 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2246 Aed-Chr3 25882712 25883359 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2246 1 215 AP2-EREBP Transcription Factor Family AT1G50640 46.091 7.14e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aed3g2246 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2246 K09286 - gmx:100795557 244.588