Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2245 ATGGAAAACTCAGACAACGACGAACCCGAAAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCCCGCACGCCTCGAAACTCCATCAATTCTCCTACCTCCAACAAAATGGCTGATGCAGGAGTCTTACAGTTCCAGAATCAGCAGCTTGTTCAACAGATAGACATCCAAAAACATGCTTTGCATGATCTCGAAGAAAAAATCAAAGAATTGAAAGGAAAGCAATGTTCTTATGATGACTTATTAATTGCATTGAACCAACTCTGGATTCAGTTGGTTGACGATATGATTCTTCTTGGAATACGAGCCGGGGGAGGCAAAGGCAAAGACACATTGCAACATTTGACTGGCATTGATATTCCTCAAGGTTCACTTCCTTTGTGTCCTGCTGAGGATATATTTCTATGTAGATTAATCCAGAAAGATTCTATTAAAGGATTCAGTGATGATGAGATCATTAGTTATGTTGAGGGGGCCCTTGTTTTGCGTCAGTCATCTACAAGGGAGTTGTTGAAACTTCTGAAAGATACCATTGACGATCAGATGGAAAGAGCAGGCAGTATAGCTCAGGTTTTGCATGGAGATTTATCTTCAGAAGATGCTATAATCCAAATGTCTAAGATTGATGATATGGCAAAAGAGGAGGCTGATAATTTACGGGAAGTGATTGATACTCTCCATGCGAAACATAAAGAGTATTCTGTTGCTATTCAAAATTCTATCAATGAGTGTTCACAAGATCAATCTGAGATTAAACGCCTTGCAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAGGATGCAGCAATAGGAATGAATTCCCCCAATGCAGATGCAGTGAATGGAAACCTGTCTCCTGAAAACATTGCAGACAGGACCATGGGTTTGCGTGAGTTGAAGGATTCAATTGAAGAAGCAAAGATAGTGGATGCTGATCGTCTTTCTGAGCTTCAAGATGCACATGAAGACAATCAGACCTTGACAAAGCAGTTCCAAGATCTTCAGAATGAACTGAAAGATGATAAGTATGTACGCTCTTCTCGAATATACTCTTTAGCTAATGATCAACTTCAACATTGGATGACTGAATTGGCCCGGTATAAAACATTGGTAGAATCGCTGCAGGCTGGCAGTGCTCATGTTGCAAAATGGGAGAATGAACTAAAATTGAAATTGGAGTCTGCTGATAGTGCAAGGCAGATCCTTGAAAATTCTGACCATAGGATTGATGAACTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAAATGGAAGAAGCTAAACAGGATACTGGTCAGCATATAACTTGTTCTGTGTTTAGACTTGGGCAGACTAGCGAACTTAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATCAAGTCTTTAAAAACATTGACTGAAAAGTTACAGAAGGAGAATCAGGAATTCGAGTTTGTTCTGGATATGCATGGCCAGGAGAATTATGATAAAAGATATTCAGAAGTTAGAGAATCTGAAAGTAAAGGTCACGCACAAGCTGAAATACTGAAAAATGCTTTAGATGAGCATAGCTTAGAGTTGAGAGTTAAAGCTGCTAATGAAGCTGAAGCTGCTTGTGAACAAAGGCTCTCTGCCGCAGAAGCTGAAATAGAGGACTTGAGGGTCAAGCTGGATGCATCTGAGAGGGATATTTTGGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCCGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATTGAGAGGGATGACTATAATATTAAGCTTGTATCAGATAGCGTGAAGACGAAACAGGCGCACAATGCTTTAATGTCCCAGAAGCAGGCCTTAGCTAAGCAACTTCAACATATTAATACGTCAATGGAAAATTCAAAGACGAGGATTATACACAGTGAAGAGCAGATGAAAGCTATTCTATCCGATGCCATTAAATGTAATCAAGAAGAAAAACACCTTGCAGTCAGCTTGGAATTTGCAAAATGGGAATTGGCTGATGCCGAGAAGGAGTTGAAGTTGCTCAAGTCTTCTGTTTCCTCTTCAGAGAAAGAATACGATCAAATTCAGAAAGATACGGAAGCTATTGAAATAGAATTGGAGAGTGAAAGGAGTTTACGGAAGAAGCTCGAGGAAGAACTAGGAGAAATGAACGACAAAATTGATGAGCTGACTTCCGAAACTGGAGAAACCACAATACAAAAACTCGAAAAAGAAATACGGATTTGCAAGAACATGATCAAGTGTACTGTCTGTACTGATCGTCCGAAGGAGGTTGTGATTGTCAAGTGCTATCATCTATTTTGCAATCCATGCATTCAGAGAAATCTAGAGCTTCGGCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGATACTTTTGAGAGACATCGCGTGGTCTTCACCGTTGGAACTTCCATCGCTTCCATTGCCACTGCTTGGATCGGTTATTCCTTGCGCCATTTACATGAATCCAAAGTTGATCAAAGGCTTCAATCCATTGAAAATGCTGTCTCTATCCATCTACATACTTCTCTTTCCCTTTTATTTTCGTTTCTCTTGCTTCATCTATTTATTATTATGTGTTGCCGCCAGATGAAAAACAATTCCAATCTCCAACATTCCGAAATCAAAGACATTGTTGCCGATTCCGCTTCCGGGGGTTGTAGCATTCCTGCTTGTGCCGCCACTGCTGGAACCTCGTATGCCTTAGGATGGAGAGGTGGAAGTTGGTATGCAACTAAGAAGTTCAGAAAGGAGCAGATGAAAATGCTAGGACAGATTACACCTAGAACACCTAGAAGATGGCAATTGCTTGGGAATTTAAAACCTAGAGGGTTGCAATTCCAGTTCCTTAGAAGGAAACTTTCAAGATCCAAAGTGTCTGATACTGCCACAAAAACATCTGAAACAAGTATAAAGGATGCTTCTACCACACATATTGCTGGAAAATCCGATTAG 3099 0.4046 MENSDNDEPEKKRPHLTSVSSRTPRNSINSPTSNKMADAGVLQFQNQQLVQQIDIQKHALHDLEEKIKELKGKQCSYDDLLIALNQLWIQLVDDMILLGIRAGGGKGKDTLQHLTGIDIPQGSLPLCPAEDIFLCRLIQKDSIKGFSDDEIISYVEGALVLRQSSTRELLKLLKDTIDDQMERAGSIAQVLHGDLSSEDAIIQMSKIDDMAKEEADNLREVIDTLHAKHKEYSVAIQNSINECSQDQSEIKRLAGELDEIVAELEESRRKLVNLEMQKDAAIGMNSPNADAVNGNLSPENIADRTMGLRELKDSIEEAKIVDADRLSELQDAHEDNQTLTKQFQDLQNELKDDKYVRSSRIYSLANDQLQHWMTELARYKTLVESLQAGSAHVAKWENELKLKLESADSARQILENSDHRIDELELQLQKCIIEKNDLEIKMEEAKQDTGQHITCSVFRLGQTSELKSLANKCAEQVLEIKSLKTLTEKLQKENQEFEFVLDMHGQENYDKRYSEVRESESKGHAQAEILKNALDEHSLELRVKAANEAEAACEQRLSAAEAEIEDLRVKLDASERDILELTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKTKQAHNALMSQKQALAKQLQHINTSMENSKTRIIHSEEQMKAILSDAIKCNQEEKHLAVSLEFAKWELADAEKELKLLKSSVSSSEKEYDQIQKDTEAIEIELESERSLRKKLEEELGEMNDKIDELTSETGETTIQKLEKEIRICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFDTFERHRVVFTVGTSIASIATAWIGYSLRHLHESKVDQRLQSIENAVSIHLHTSLSLLFSFLLLHLFIIMCCRQMKNNSNLQHSEIKDIVADSASGGCSIPACAATAGTSYALGWRGGSWYATKKFRKEQMKMLGQITPRTPRRWQLLGNLKPRGLQFQFLRRKLSRSKVSDTATKTSETSIKDASTTHIAGKSD 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2245 1032 MobiDBLite consensus disorder prediction 1 35 - -
Aed3g2245 1032 SMART ring_2 788 826 IPR001841 -
Aed3g2245 1032 MobiDBLite consensus disorder prediction 19 35 - -
Aed3g2245 1032 PANTHER RING FINGER PROTEIN-RELATED 11 451 IPR013956 GO:0004842|GO:0010390
Aed3g2245 1032 PANTHER RING FINGER PROTEIN-RELATED 464 836 IPR013956 GO:0004842|GO:0010390
Aed3g2245 1032 CDD RING-HC_BRE1_like 786 827 - -
Aed3g2245 1032 Pfam Zinc finger, C3HC4 type (RING finger) 787 829 - -
Aed3g2245 1032 ProSiteProfiles Zinc finger RING-type profile. 788 826 IPR001841 -
Aed3g2245 1032 Coils Coil 543 584 - -
Aed3g2245 1032 SUPERFAMILY Tropomyosin 650 788 - -
Aed3g2245 1032 Coils Coil 407 448 - -
Aed3g2245 1032 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 11 451 - -
Aed3g2245 1032 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 464 836 - -
Aed3g2245 1032 Coils Coil 329 349 - -
Aed3g2245 1032 Coils Coil 46 73 - -
Aed3g2245 1032 Coils Coil 250 284 - -
Aed3g2245 1032 MobiDBLite consensus disorder prediction 1008 1032 - -
Aed3g2245 1032 ProSitePatterns Zinc finger RING-type signature. 803 812 IPR017907 -
Aed3g2245 1032 Coils Coil 599 619 - -
Aed3g2245 1032 Coils Coil 697 766 - -
Aed3g2245 1032 MobiDBLite consensus disorder prediction 1 17 - -
Aed3g2245 1032 SUPERFAMILY RING/U-box 787 832 - -
Aed3g2245 1032 Coils Coil 483 503 - -
Aed3g2245 1032 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 837 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2245 Aed-Chr3 25868534 25879553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2245 762 835 RAD5 or RAD16-like Gene Family AT5G05130 26.506 7.26e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2245 K10696 - gmx:100796610 1412.13