Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2242 ATGCTTCCAAAACCCGTTTCTTTACAACAAACCCCATCTTTCGTTTCTCTCAAAGTTCAATGCTTTCGCGCTTCTGAACCCACCCCTGTTCCCTCTTCTTCTCATTTGAGCTCCGTTCTCTCGTCACGTGCACCCAAACGTGTCTCTCGCCTCTTGAGGGCCGAAGCTCAACACGCTCTAATGGATTACCTGCATTTCACGCGTTGCTACACCTTCTCCGACGCAGAGTACATCAGCAGGAACTCACCACGTTTTGTTGAATCATTGGTGTCAATGATTGACGACAAAGACGTTCCTCGATCGTTTAAAAAATTCCTCAGGTACAACCCCATTAACGAGTTTGAACCGTTTTTCGAGAGTTTGGGAATGGACCCTTCTGAGTTGCATTTGTTTCTCCCTCCTGGCATGATTTTCGTAGCTGATGATTATGTGCTGCTTGAAAATTTTCATGCTTTGTGTAACTATGGGGTGCCAAGGAATAGAATGGGGAAGTTTTATAAAGAGGCGAAAGAGATTTTTGGCTATGCTAGTGGTGTGTTGTTGTTAAAGTTAGAGGCTTATGAGAATCTGGGTTTGAGTAAATCAACTGTTGTCAAGCTTGTTGTTTGTTGCCCTTTGCTTTTGGTTGGTGGTGTCAATTTTGAATTTGTTGCTGTGCTTGGTTGGTTGAAGAGAATTGGGATTAAAAGTGATTGGATGGTGAATTACTTGTCTTGTTCAAGGACATATAGATGGAAAATAATGCTTGATACCATGCAGTTTCTTCATAAAGTTGGTTATTCTGAAGAACAAATGCACAATTTGCTTAGGGAAAATCCTAAGTTGTTGTTGGAGGGTTTTGGGAGGAAAGTGTACTTATTTTTTGGTCGATTGCTTAAAGTGGGTGTTGAGATGAATGTGATTTATTCTTATTTTGTAGAGTATCCCAATATCTTGTCAAAGAAGTGTGCGAAAGATATGTTGAGAGTGATTGACTTTTTGTGTGCTATTGGAATGGGAAAAGATGACATTACACACATTTTGTCTAAGTACATGCATCTCCTGACTACACGATCCTTGAAAGGTCATAAAACTGTTTGTCAGGAGTTAAAAGTTGGAAAAGCTGATTTGTGCAAAATCATTAAGGACGATCCATTGAAGCTAATTAGTTTGGCATCAAAACAGGAACAGAAGGGCAATGGAAAGATTGATAGTCATGACCCACGTAATTATTTGGAAAAGACAACTTTCTTGCTGAAATTGGGATATACTGAGAACTCTGAAGAGATGGCAAAAGCATTAAAAATGTTCCGAGGGAGAGGTGATCAATTACAAGAGAGGTTTGATTGCCTGGTAGAAGCTGGTTTGGACTATAACAGTGTGATCGAAATGATAAAACGAGCTCCTATGATTCTAAGCCAGAACAAAGCTGTAATTAAAAAGAAGATTGATTTCTTAAGAAATATTTTAGGTTACCCACTAGAATGTCTCGTGGGATTCCCAACATACTTTTGCCATGACTTGGATAAAATTGTTGAAAGACTTACAATGTATGCATGGCTGAAGGAGAGGAATGCAGTAAATCCTACATTAACCCTGAGTACCATAATTGCATCCAATGATAAACGCTTTGTAAAGTACTTTGTGAATTCCAGCCATCTGGAAGGGTTTAAAAAGGATAATCTGGAATATGGCTTTCTTTCTTCAAGGAAAGACTACTCAGTTGACCTCTGCAGTTTGGTTGATTTAGAGAACAAGAACTCCAAAGAGATTCCCTTGGCACCTTGCATGCTGGAAAACAGGAAGAGCCCATCAAAAGAGGAAGCTATTGGAATCCCAAGTGACCGTTTTGAAACCATATCTTATGAAACATAA 1854 0.3948 MLPKPVSLQQTPSFVSLKVQCFRASEPTPVPSSSHLSSVLSSRAPKRVSRLLRAEAQHALMDYLHFTRCYTFSDAEYISRNSPRFVESLVSMIDDKDVPRSFKKFLRYNPINEFEPFFESLGMDPSELHLFLPPGMIFVADDYVLLENFHALCNYGVPRNRMGKFYKEAKEIFGYASGVLLLKLEAYENLGLSKSTVVKLVVCCPLLLVGGVNFEFVAVLGWLKRIGIKSDWMVNYLSCSRTYRWKIMLDTMQFLHKVGYSEEQMHNLLRENPKLLLEGFGRKVYLFFGRLLKVGVEMNVIYSYFVEYPNILSKKCAKDMLRVIDFLCAIGMGKDDITHILSKYMHLLTTRSLKGHKTVCQELKVGKADLCKIIKDDPLKLISLASKQEQKGNGKIDSHDPRNYLEKTTFLLKLGYTENSEEMAKALKMFRGRGDQLQERFDCLVEAGLDYNSVIEMIKRAPMILSQNKAVIKKKIDFLRNILGYPLECLVGFPTYFCHDLDKIVERLTMYAWLKERNAVNPTLTLSTIIASNDKRFVKYFVNSSHLEGFKKDNLEYGFLSSRKDYSVDLCSLVDLENKNSKEIPLAPCMLENRKSPSKEEAIGIPSDRFETISYET 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2242 617 Pfam mTERF 428 537 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 Pfam mTERF 252 481 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 PANTHER CGI-12 PROTEIN-RELATED 28 551 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 28 551 - -
Aed3g2242 617 SMART mt_12 455 486 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 SMART mt_12 420 450 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 SMART mt_12 198 229 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 SMART mt_12 487 520 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 SMART mt_12 163 193 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 SMART mt_12 303 333 IPR003690 GO:0003690|GO:0006355
Aed3g2242 617 Gene3D Transcription termination factor 3, mitochondrial 284 552 IPR038538 -
Aed3g2242 617 Gene3D Transcription termination factor 3, mitochondrial 84 283 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2242 Aed-Chr3 25844357 25847135 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Aed3g2242 mTERF 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2242 - - gmx:100803162 944.88