Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2215 ATGGTTTCCAAAGAGCAAAAGAGAGCAGCACTGCATGAGAAGCTGCAACATCTTCGTTCTATTACTAACTCTCATGCTCTAAACAAAACCTCGATCATAGTTGATGCATCAAAGTATATCGAAAAGTTAAAGCAAAAGGTAGAAAGACTGAATCAAGAGATAGCCTCTGCAGAGACTTCAAGTGTCCACAACCCCTTGCCTATGGTTACAGTAGAAACCCTAGAAAAGGGATTTCTTATAAATGTTTTCTCAGCAAAAGGGTGTTCAGGTCTACTTGTTTCCATATTGGAGGCCTTTGAAGGGATGAGACTCACTGTGCTGGAAGCTAGGGTTTCTTGTACAGACACTTTTCGATTCCAAGCAGTTGGAGAAAATGAAGAACAAGCGGAGACAATTGATGCACATGTTGTGAAACAAGCTGTGGTACAAGCAATAAAGAATTGGAGCAAAAGTGGCGATCAAGAAGAGTAA 471 0.4076 MVSKEQKRAALHEKLQHLRSITNSHALNKTSIIVDASKYIEKLKQKVERLNQEIASAETSSVHNPLPMVTVETLEKGFLINVFSAKGCSGLLVSILEAFEGMRLTVLEARVSCTDTFRFQAVGENEEQAETIDAHVVKQAVVQAIKNWSKSGDQEE 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2215 156 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 2 156 - -
Aed3g2215 156 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 2 156 - -
Aed3g2215 156 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 61 IPR036638 GO:0046983
Aed3g2215 156 Gene3D - 3 64 IPR036638 GO:0046983
Aed3g2215 156 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2215 Aed-Chr3 25641972 25643515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2215 1 116 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 31.783 8.70e-06 42.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2215 - - gmx:100306253 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2215 3 25641972 25643515 Aed2g1014 2 8017760 8019676 ECH
Aed9g2121 9 24418225 24419651 Aed3g2215 3 25641972 25643515 ECH
Aed2g1014 2 8017760 8019676 Aed3g2215 3 25641972 25643515 ECH
Aed3g1916 3 23429254 23430491 Aed3g2215 3 25641972 25643515 ECH
Aed4g2189 4 24665170 24666930 Aed3g2215 3 25641972 25643515 ECH
Aed3g2215 3 25641972 25643515 Aed3g2215 3 25641972 25643515 ECH
Aed7g2002 7 22868017 22869384 Aed3g2215 3 25641972 25643515 PCT