Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2199 ATGGTGGTGAGTGAAGAGCGTTGGGATGGAGTGGTTGTGACGCAGTCAAACTTCTTAGCACTTGAAGCGTTCAAGCAAGAGTTGGTTGACCCTGAAGGCTTCTTGAGAAGCTGGAACGACACTGGCTTTGGAGCTTGTTCTGGAGGTTGGGTTGGCATCAAGTGTGCTCAGGGACAGGTTATTGTTATCGAGCTTCCATGGAAGGGGTTGAAGGGCCGTATCACTGAGAGGATTGGCCAACTTAGAGGACTCAGAAAGCTTAGTCTTCATGATAACCAAATTGGTGGTTCGATCCCTTCAGCACTTGGACTTCTTCTCAATCTTCGAGGAGTTCAACTCTTCAACAACAGGTTCACAGGGTCCATCCCTCCTTCATTAGGGTCATGTCCTTTGCTTCAGTCTTTAGACCTCAGCAATAATTTGCTCACTGGGACAATCCCCATGAGCCTTGGGAATGCCACTAAGCTTTATTGGCTTAACTCCAGCTTTAATTCCCTGTCTGGCCCAATACCAAATAGCCTAACTCGCTTAACTTCTCTCACCTACCTATCTCTTCAACACAATAATCTCTCGGGCTCTATTCCCAACTCATGGGGTGGTAGTAGCAGCTTGAAAAATCACTTCTTTCGGCTTCAAAATCTTTTCCTAGATCATAACTTCTTCACTGGAAGCATTCCTGCTTCTTTGGGCAGCTTGAGTGAACTTACAGAGGTTTCTCTTAGTCATAACCAGTTTAGTGGAGCTATCCCAAGTGAACTAGGAAGCCTTTCTAGACTTAAGACAGTAGATTTTTCTAATAATGCCTTGAATGGAAGCTTGCCTGCCACTCTCTCCAATCTTTCCTCACTCACTCTCTTGAATGTAGAGAACAACCACCTTGGCAATCAAATCCCACAAGCTTTAGGCAGATTGCACAATCTTTCTGTTCTAGTTCTGAGCAGAAACCAATTTAGTGGTCACATTCCTCAAAGTATTGGAAACATTTCAAAGCTTACACAGCTTGATTTGTCACTGAATAATCTCAGTGGAGAAATCCCAGTCTCCTTTGACAATCTGCGCAGTCTTGATTCCTTCAACGTTTCTCATAACAACCTCTCTGGTCCAGTTCCAACCCTACTTGCCCAAAAATTTAACTCAAGCTCATTTGTGGGAAACATTCAACTATGTGGATATAGCCCTTCAACCCCATGTCCCTCCCTAGCTCCTTCTGGATCCCCTTCTGAAATATCAGAACACCGTCATCATAAGAAAAAACTAGGCACCAAAGACATAATTCTCATAGTAGCAGGAGTGCTCCTTGTACTCCTAATAACACTTTGCTGCATTCTGCTATTCTGCTTGATCAGAAGAAGAGCAACATCAAATGCGGAGGGTGGCCAGGCCACAGGGAGAGCATCTGCATCAGCCTCTGCTGCCAGGACAGAAAAAGGAGTCCCTCCGGTCGAAGCCGCTGAGGCGGGTGGTGAGGCCGGAGGTAAACTAGTCCATTTCGATGGACCATTGGCTTTTACAGCTGATGATCTATTGTGTGCAACAGCAGAGATAATGGGAAAGAGCACATATGGAACTGTGTACAAGGCTACATTAGAAGATGGAAGTCAAGCTGCGGTGAAACGATTGAGGGAAAAGATCACTAAAGGTCAGAGAGAATTCGAATCTGAAGTTAGTGTTATAGGAAGAATTCGACACCCTAATCTCTTGGCATTAAGAGCCTATTACTTGGGACCCAAAGGAGAAAAGCTTCTAGTGTTTGATTACATGCCCAACGGAAGTCTTGCTTCTTTCCTACATGCTCGTGGGCCAGAAACAGCGATTGATTGGCCAACAAGGATGAAAATAGCACAGGGAATGGGGCGTGGCTTGTTATACCTTCATTCCCAAGAGAACATTATACATGGAAACCTTACATCCAGCAACGTGGTGCTGGATGAGAACACGAATGCTAAAATAGCTGATTTTGGTCTCTCTCGGTTGATGACAACTGCTGCAAACTCTAACGTGATTGCCACTGCTGGAGCATTGGGATACAGAGCACCCGAGCTCTCGAAGCTGAAAAAAGCCAACACAAAAACTGATGTATACAGTCTTGGTGTGATCTTGTTAGAACTCCTAACGGGGAAGCCACCTGGTGAGGCTATGAATGGCGTGGATTTACCTCAGTGGGTTGCCTCCATTGTCAAAGAGGAGTGGACAAATGAGGTTTTCGATGTGGAGTTGATGAGAGATGCTTCAACATACGGCGACGAGATGCTTAACACGTTGAAGCTTGCTTTGCATTGTGTTGATCCTTCTCCATCAGCACGACCAGAGGTTCAGCAAGTCCTTCAGCAGCTTGAAGAGATTAGACCAGAGATATCAGCAAGTTCCGGTGACGATGGACCCATCCCTTCCACTAGTGAATAA 2403 0.4548 MVVSEERWDGVVVTQSNFLALEAFKQELVDPEGFLRSWNDTGFGACSGGWVGIKCAQGQVIVIELPWKGLKGRITERIGQLRGLRKLSLHDNQIGGSIPSALGLLLNLRGVQLFNNRFTGSIPPSLGSCPLLQSLDLSNNLLTGTIPMSLGNATKLYWLNSSFNSLSGPIPNSLTRLTSLTYLSLQHNNLSGSIPNSWGGSSSLKNHFFRLQNLFLDHNFFTGSIPASLGSLSELTEVSLSHNQFSGAIPSELGSLSRLKTVDFSNNALNGSLPATLSNLSSLTLLNVENNHLGNQIPQALGRLHNLSVLVLSRNQFSGHIPQSIGNISKLTQLDLSLNNLSGEIPVSFDNLRSLDSFNVSHNNLSGPVPTLLAQKFNSSSFVGNIQLCGYSPSTPCPSLAPSGSPSEISEHRHHKKKLGTKDIILIVAGVLLVLLITLCCILLFCLIRRRATSNAEGGQATGRASASASAARTEKGVPPVEAAEAGGEAGGKLVHFDGPLAFTADDLLCATAEIMGKSTYGTVYKATLEDGSQAAVKRLREKITKGQREFESEVSVIGRIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLASFLHARGPETAIDWPTRMKIAQGMGRGLLYLHSQENIIHGNLTSSNVVLDENTNAKIADFGLSRLMTTAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVILLELLTGKPPGEAMNGVDLPQWVASIVKEEWTNEVFDVELMRDASTYGDEMLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPEISASSGDDGPIPSTSE 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2199 800 Gene3D Ribonuclease Inhibitor 208 402 IPR032675 -
Aed3g2199 800 Gene3D Phosphorylase Kinase; domain 1 516 587 - -
Aed3g2199 800 Gene3D Ribonuclease Inhibitor 127 207 IPR032675 -
Aed3g2199 800 Pfam Leucine rich repeat 306 365 IPR001611 GO:0005515
Aed3g2199 800 Pfam Leucine rich repeat 234 293 IPR001611 GO:0005515
Aed3g2199 800 Pfam Leucine rich repeat N-terminal domain 19 55 IPR013210 -
Aed3g2199 800 ProSiteProfiles Protein kinase domain profile. 510 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aed3g2199 800 CDD STKc_IRAK 516 781 - -
Aed3g2199 800 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 790 - -
Aed3g2199 800 SUPERFAMILY L domain-like 54 398 - -
Aed3g2199 800 PRINTS Leucine-rich repeat signature 132 145 - -
Aed3g2199 800 PRINTS Leucine-rich repeat signature 328 341 - -
Aed3g2199 800 SUPERFAMILY Protein kinase-like (PK-like) 514 782 IPR011009 -
Aed3g2199 800 MobiDBLite consensus disorder prediction 781 800 - -
Aed3g2199 800 MobiDBLite consensus disorder prediction 457 485 - -
Aed3g2199 800 Gene3D Transferase(Phosphotransferase) domain 1 588 792 - -
Aed3g2199 800 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 790 - -
Aed3g2199 800 Gene3D Ribonuclease Inhibitor 17 126 IPR032675 -
Aed3g2199 800 Pfam Protein tyrosine and serine/threonine kinase 513 778 IPR001245 GO:0004672|GO:0006468
Aed3g2199 800 SMART LRR_typ_2 352 375 IPR003591 -
Aed3g2199 800 SMART LRR_typ_2 81 105 IPR003591 -
Aed3g2199 800 SMART LRR_typ_2 177 200 IPR003591 -
Aed3g2199 800 SMART LRR_typ_2 280 304 IPR003591 -
Aed3g2199 800 SMART LRR_typ_2 328 351 IPR003591 -
Aed3g2199 800 SMART LRR_typ_2 232 256 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2199 Aed-Chr3 25568560 25571146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2199 8 783 Receptor kinase-like Gene Family AT3G51740 64.586 0.0 963
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Aed3g2199 PK_Tyr_Ser-Thr 7.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2199 - - gmx:100783979 1370.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2199 3 25568560 25571146 Aed2g1052 2 8369586 8373457 ECH
Aed3g2199 3 25568560 25571146 Aed3g2199 3 25568560 25571146 ECH