Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2195 ATGGCACACAGAAAAAGGCGTTTAGATCAACTCAAGCATCCATTCAGTCCTCACCCAGCCTTTGAAGCAGTTGCATTTGGATCATGGCAAGCTGTGGAGTACTTAAAAATAGAGGGAGGAGTTATGTCAATGCAATTTGCAGATAATTATAATATAGCCATGGAGAAAGGACCGGTTTGGGTTGATGCTAAAATAAGCTCTGTACAAAGAAAGCCTCATGACTCCGAGTGCTCGTGTCAGTTTTATGTGAACTTCTATGTTCATCAAGGTTCACTCGGTGCAGAGCTAAGAACTCTTAACAAGGAGATAAAAGTAGTTGGAATCAATCAAATATCCATCCTCCAGAAACTTGAAAATAATCCTTGTGTAAACCAGCCCCACCGGTGGGATTCATCTGAGGACTGTACCGTCATATCACACACCAAATTGCTTCTGGGAAAAGTATTAGGTGATCTTTCATGGTTTGTTGTTACCTCAGCTATAAAGAAAATGGTTTCATTCCGCGTAAGATCTCTAGAAGACAAGCTAGTGTATCAAACTTTGGGAAGGGACACAGTTGGCAGCAGTACTACTTCATTGAACAATGAGGCTCACATTGATGTTGTGAATTTCAAAATCGAAAAAGGCATGATAATGCCCGTTGTTTCTCAAGTGGCTGCACCTAGAACCAAGAGTCTTGAACCTGTTCAGGAATGCATTGAAGACAAAGAATCACCATCATCTTACAATGTTGAGGGCTTACGGCGTTCCAAGCGTCGAAATGTACAGCCTGATCGTTACCTTGGTTGCAACAATGATGTTTCCCAGATTGATGTTGGCTCTTTCAGAAACTTACCACCAGTTAGGATAGATACCACCTGGAGAAATGATGCCGCCAACAACAGCAATGACAATCATGATGGTGATCCTGAACTGCATATGCCACTAGCACGCCTGCTTGCTTTGCAGCAGCAGAAGAAGTGTCTATTAGGGGATACTACTGATCAAGTCAAGAAGGCGGGGGCAAGTACTTGCCGGGAGTTTATGGTGTACAAAAGAAAGAAGTCTAAACTCCAGGAAGTGAAGTCAGGAGATGGTGATCAGAATGAACATCAAAATGAAAATGAAAATCATCTTGCTATTATTCCTGTTCCTGCTGAACAGGTTCCGATGAAAGTTATGCATTGTGATGATCCAGATGACAAGGTTACTAGAAGTTATGGACATCATGAATCCTCTGAAGTTCCTTCCAAATTTCATCATCTAACTGGCACCACTTCGAAGAACATCACTTTAAAGAAGAACGATATTAAGTTGTTGACTTTGGAGTCTCATAATCATGCTGCAGCAAAGTCACATGATGCAGACAAGGGTGATGATTTGTCCTTGAGATATCATCATAGTTATGGCACCCCTAAGTCAGTGAGGAAGGGTTTGAGTGGTCTGGAAGATACTGTGGATCTTGGAAACAAATGGGAAGGGATTAGTTCCAGTAAAGGAGTTCAAGGGAAAAAGCATCGTCCAACATATTTCAGAAGTGGTGATCATGGATCTGAGAACAGATACAATTATAAAGACCGAACCTTGAATGCTGCTGGTTATAAGGATTTGATCAATTCATACTTGAGGAATATTAATACAGGACTAGCGAATGAAGAAACATCTATTGCTGACCAGTGGAAGGAAAACAAGGAAAACAACGCAGTAAGCAACATTGAGAAAATGACGGAAACTGAGGTGGTCAATGAAGAGGAGGCAGAAGAAGAAGAAGAAGATGAACTGGAAATGCTGTGGAGAGAACTGGATATGTCATTGGCATCATCTTATCTAGAAGAAGACGCAGAGAATCCAAATGCTGCTGTTATAACTGAGGAACCAGAAATGCCCAACAATGGTTGTCCACATGATTTCAGAATGAATGAAGAGATTGGAATTTACTGCTATAGATGTGGCTTTGTAAAAACTGAGATCAAATATATTACACCACCTTTTATTGAACGTCCATCGCGACACCAAGAGGAAAAGCAGAGTCCCGAAGAAGAAGATTCAAAAGCTAAAGCTGACGAGGACGAAGACATGGATCTTTTGCCAACTCTAGACACTCCTGAGAAGCCTTTGTCTCAAGAAAATGACACTGTTTGGTCATTAATTCCAGAACTTAAAGAAAAGTTGCACGCCCACCAGAAGAAAGCATTCGAGTTTCTTTGGCAAAACATTGCAGGGTCCATGGACCCGGGACTAATGGAAGCAGCATCCAAAAAAAGAGGTGGCTGTGTGATATCCCACACTCCCGGAGCCGGAAAAACGTTTCTCATCATAGCTTTTCTTGTTAGCTACTTGAAGTTGTTCCCAGGGAAGAGGCCTCTAGTCCTTGCTCCCAAAACAACACTCTATACTTGGTACAAGGAGTTTATCAAGTGGGACATTCCTATACCGGTGTATCTCATCCATGGCCGTCGAACCTACCGAGTTTTCAAGCAGAAATCAACTATCGTCATTCCTGGAATTCCAAAGCCCACTGATGATGTCAAGCATGTTCTTGATTGCCTTGAGAAGATACAAAAATGGCATTCGCACCCGAGTGTTCTCATCATGGGTTACACTTCCTTCTTAACACTGATGCGAGAGGATTCCAAGTTTGCACACAGAAAATACATGGCTAAGGTGTTGAGGGAAAGCCCTGGGATCATGGTGCTGGATGAAGGCCACAATCCTAGAAGCACAAAATCTAGGTTGAGGAAGGTTTTGATGAAAGTGCAGACAGAGTTGAGAATACTTCTTTCAGGAACACTGTTCCAGAACAATTTCTGCGAATACTTCAACACTCTGTGCTTGGCTAGACCAAAGTTCATTCAGGAAGTACTCAAAGAATTGGACTCGAAATACAAGAGGAAAGGGAGAGTGGCGAAAAAAGCGAATCACTTATTAGAGTCGCGGGCAAGAAAATTCTTCTTAGACCAAATTGCTAAGAAGATAGACTCAAAAAACAAAAAGGAGAGAAAGCAGGGTCTAGAGATGTTGAGAAACGTGACGAATGGTTTCATAGATGTGTATGAAGGTGGGAGTACTGATGGTCTACCTGGTTTGCAAATCTACACATTGCTGATGAATGCAACTGATAAACAGAACGAGCTTTTGCATGGACTGAAAGTGAAAATGGACAACGCCAAAGGATACCCCCTGGAGTTAGAGCTTTTGATAACTCTTGGTTCGATACATCCTTGGTTGCTGAAATCAGCTGTTTGTGCTCAGAAATTCTTCACTCCGGGGCAATTGATGGAGCTAGAGAAAAGCAAGTTTGATCTGAAAGCAGGGTCGAAAGTAAAGTTTGTGTTGAGCCTCGTCTACCGGGTTTACCAGAACGAGAAGGTTCTCATATTTTGCCACAACATTGCACCTGTTAAGTTGTTTGTGGAGTATTTTGAGAAGTACTTTGGGTGGATAAACGGTAGGGAAGTGTTGGTGCTAACCGGGGAACTAGAACTGTTTGAAAGAGGAAGAGTGATGGACAAGTTTGAGGAGCCAAATGGAGTGGCAAAGATACTACTTGCTTCAATCACAGCATGTGCTGAAGGCATTAGTTTAACAGCTGCTTCAAGAGTGATCATGTTGGATTCAGAATGGAATCCTTCAAAAACAAAGCAGGCCATTGCCCGTGCCTTTCGACCCGGTCAGCAGAAGGTTGTGTATGTTTATCAGCTCTTGGTTTCAGGTTCAATGGAGGAACAGAAGCACTCAAAAACCACATGGAAAGAGTGGGTGTCAGACATGATCTTTAGTGAGGACTTTGTGCATTCTAGGAGGAAAATTGAGAAGATTGAAGATGATGTACTCAGGGAAATGGTTGAAGTGGACCACTCTAAATCATTCCATTCGATCCTCAAGAATGAACAAGCTTCTTCTACTAACAAATAA 3894 0.4214 MAHRKRRLDQLKHPFSPHPAFEAVAFGSWQAVEYLKIEGGVMSMQFADNYNIAMEKGPVWVDAKISSVQRKPHDSECSCQFYVNFYVHQGSLGAELRTLNKEIKVVGINQISILQKLENNPCVNQPHRWDSSEDCTVISHTKLLLGKVLGDLSWFVVTSAIKKMVSFRVRSLEDKLVYQTLGRDTVGSSTTSLNNEAHIDVVNFKIEKGMIMPVVSQVAAPRTKSLEPVQECIEDKESPSSYNVEGLRRSKRRNVQPDRYLGCNNDVSQIDVGSFRNLPPVRIDTTWRNDAANNSNDNHDGDPELHMPLARLLALQQQKKCLLGDTTDQVKKAGASTCREFMVYKRKKSKLQEVKSGDGDQNEHQNENENHLAIIPVPAEQVPMKVMHCDDPDDKVTRSYGHHESSEVPSKFHHLTGTTSKNITLKKNDIKLLTLESHNHAAAKSHDADKGDDLSLRYHHSYGTPKSVRKGLSGLEDTVDLGNKWEGISSSKGVQGKKHRPTYFRSGDHGSENRYNYKDRTLNAAGYKDLINSYLRNINTGLANEETSIADQWKENKENNAVSNIEKMTETEVVNEEEAEEEEEDELEMLWRELDMSLASSYLEEDAENPNAAVITEEPEMPNNGCPHDFRMNEEIGIYCYRCGFVKTEIKYITPPFIERPSRHQEEKQSPEEEDSKAKADEDEDMDLLPTLDTPEKPLSQENDTVWSLIPELKEKLHAHQKKAFEFLWQNIAGSMDPGLMEAASKKRGGCVISHTPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSTIVIPGIPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFIQEVLKELDSKYKRKGRVAKKANHLLESRARKFFLDQIAKKIDSKNKKERKQGLEMLRNVTNGFIDVYEGGSTDGLPGLQIYTLLMNATDKQNELLHGLKVKMDNAKGYPLELELLITLGSIHPWLLKSAVCAQKFFTPGQLMELEKSKFDLKAGSKVKFVLSLVYRVYQNEKVLIFCHNIAPVKLFVEYFEKYFGWINGREVLVLTGELELFERGRVMDKFEEPNGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVSGSMEEQKHSKTTWKEWVSDMIFSEDFVHSRRKIEKIEDDVLREMVEVDHSKSFHSILKNEQASSTNK 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2195 1297 Gene3D - 1072 1288 IPR027417 -
Aed3g2195 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1278 IPR027417 -
Aed3g2195 1297 SMART helicmild6 1128 1217 IPR001650 -
Aed3g2195 1297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 742 942 IPR014001 -
Aed3g2195 1297 SMART ultradead3 713 954 IPR014001 -
Aed3g2195 1297 Pfam SNF2-related domain 722 987 IPR000330 GO:0005524|GO:0140658
Aed3g2195 1297 Coils Coil 565 585 - -
Aed3g2195 1297 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 56 1292 IPR044567 GO:0080188
Aed3g2195 1297 MobiDBLite consensus disorder prediction 349 367 - -
Aed3g2195 1297 MobiDBLite consensus disorder prediction 660 676 - -
Aed3g2195 1297 Pfam Helicase conserved C-terminal domain 1100 1216 IPR001650 -
Aed3g2195 1297 MobiDBLite consensus disorder prediction 501 515 - -
Aed3g2195 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 952 IPR027417 -
Aed3g2195 1297 Gene3D - 692 985 IPR038718 -
Aed3g2195 1297 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 56 1292 - -
Aed3g2195 1297 CDD DEXHc_ATRX-like 717 957 - -
Aed3g2195 1297 CDD SF2_C_SNF 1091 1228 - -
Aed3g2195 1297 MobiDBLite consensus disorder prediction 349 368 - -
Aed3g2195 1297 MobiDBLite consensus disorder prediction 490 515 - -
Aed3g2195 1297 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1103 1282 IPR001650 -
Aed3g2195 1297 MobiDBLite consensus disorder prediction 657 697 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2195 Aed-Chr3 25539561 25545587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2195 1143 1236 RAD5 or RAD16-like Gene Family AT5G05130 37.895 5.23e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aed3g2195 SNF2_N 1.3e-17 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2195 K10875 - gmx:100811703 1963.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2195 3 25539561 25545587 Aed3g2195 3 25539561 25545587 ECH
Aed7g2020 7 22984498 22989049 Aed3g2195 3 25539561 25545587 PCT