Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2192 CTTACTCTGTTTTCAGTTCACTCCTTTTGGTCTCAAACACAACGTTTCTTTTCTCTCACTTTCAGTTTCTCTTGTTTCAAAAAAAAAAAAAAACAGAAAATGGGTGGAAACTCCCCTTGTGCCTCATGCAAATTGCTGAGACGCCGGTGCACAAAGGATTGCACCTTTGCTCCTTATTTTCCTTCTGATGACCCTCAAAAGTTTGCCATAGTTCACAAGGTTTTTGGTGCCAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTGAGCAGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAATGCAAGAGTGAGAGACCCTGTGTATGGTTGTGTTGGAGCCATATCATACTTGCAAAATCAAGTTTCTGAGCTTCAAATGCAGCTTGCAGTAGCTCAAGCAGAGATACTCTGCATCCAGATGGAACATGAGCAACCACTGATGCCAGCCTCAGGAACTGATCTAGAACACAAGTCTTACTTTCTCCAAAATGACCTCTCTCAGCTTCTTGGTTTTGACACTTCTAGCAATGTAATGCACCAATTTTGCCCATGA 564 0.4255 LTLFSVHSFWSQTQRFFSLTFSFSCFKKKKKQKMGGNSPCASCKLLRRRCTKDCTFAPYFPSDDPQKFAIVHKVFGASNVSKMLQELPVEQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMEHEQPLMPASGTDLEHKSYFLQNDLSQLLGFDTSSNVMHQFCP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2192 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 34 183 - -
Aed3g2192 187 Pfam Lateral organ boundaries (LOB) domain 39 136 IPR004883 -
Aed3g2192 187 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Aed3g2192 187 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 183 - -
Aed3g2192 187 Coils Coil 118 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2192 Aed-Chr3 25516483 25517234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2192 36 165 AS2 family AT2G30130 79.699 1.70e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g2192 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2192 - - gmx:100812780 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2192 3 25516483 25517234 Aed3g2192 3 25516483 25517234 ECH
Aed7g2025 7 23029228 23030685 Aed3g2192 3 25516483 25517234 PCT