Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2181 ATGATAAGGAGGATGAAGCTTCTTTCTTCTTTGTTTGAAGAGATTCAAGAAACGGATACTCCACTACCTCCCTCTTCAATCCTGTGTCTCACAGAACTCTTCTCTGTGATGAGAAGAGTCAAAGTTTTGATCCAAGACTGCAAGGATGGAAGCTCTCTTTGGAGTCTCATGCAGCTAGAGTTCATTTCCAACCAATTTTATGTGCTTGTCAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTTTGAGTTTGCTTAATGTAACATCAGATATTAAAGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGCGAGCCGAGTTACAAGTTGATCCTAGAGAGCTTCACAGAAGAGAACAGCTTGTACAAGCAATGGCCAACAACAGTGTGCAAAACAAGAAGCACAAGGGGTTCGTTGACTTTGGCAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAGAACCCCATCAGATTATGATGGAGAAATATCCAATCTAGAGGCTGAAGCTCAGAACCAAGCTGGCACAGGAGGACTAATTGTTGTCTCCAATATAAACAATCTCATATCTCTGGTCTCATATTCCAAATCCATGATATTTAGAGATGGAGAAAATGATAGAAATGAAGAAGATTGTTGTAAGCCACTATCTTCGTTTTTGTTTAACAAAGTATATGATGATAATTCTTCATCCTCTCAGTCCATCATGACACCTAATGTTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATAAGGGACCCCGTGATTGTGGCATCAGGGCACACTTATGATAGAACCTCAATTGCACAATGGATCAACTCTGGCCATCACACTTGCCCCAAAAGTGGACAAAGGCTAATTCACACTGCTCTAATACCCAACTATGCATTGAAGAGCCTTATTCAGCAATGGTGTCATGACAACAATGTCCCAGTGAATGATCCTACAACTGAGGGAAACAACACCAATAACAACAAAAAGAAGAAGAACTCGAAGGAGGAAGCTATTGACCATATTTCTGCAAACAAAGCAGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACCGGTTCTGCTGACATCCAAAGACAAGCTGCATATGAACTTCGGTTACTCGCGAAAACTGGCATGGTTAACCGAAGCGTCATAGCCGAGGTAGGAGCTATTCCCTTTCTTGTAACACTTCTAGGATCTCAAGATTCAAGAATCCAAGAGCATGCAGTGACAGCCTTGTTCAACCTCTCGATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGACAGCATAGTGGAAGTACTCGAATCAGGGAAGACCATGGAGGCAAGGGAGAATGCAGCAGCATCAGTGTATAGCTTGTCTATGGTGGATGAGTGCAAAGTGCAAATTGGAGGAAGACCAAAAGCAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGCACTCCAATAGGGAAAAGAGATGCTGCAAGTGCACTGTTCAATCTTTCAGTTTACAATCCTAACAAGTCAAGTGTGGTAAAAGCTGGGGCAGTGCCTGTTTTGGTTGAGTTGCTGATTGATGACAAGGCTGGCATAACAGATGATGCACTTGCTGTGCTTGCTTTGTTACTTGGATGCTCTGAGGGGCTAGAGGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTCTGAGATTTGGTTCAGTGAAAGGGAAGGAAAATTCAATAACCCTTTTGCTAGGACTATGCAAAGAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTGGCAAATCCAAGGAGCATTCCTTCTCTTCAAAGCTTGGTTGCTGATGGATCTTTGAGAGCTAGGCGAAAGGCAGATGCAGTGCTTAGGTTTCTCAATAGGTGCTGCTCCCAGCCTCATCATTCTGTTTGA 1932 0.4296 MIRRMKLLSSLFEEIQETDTPLPPSSILCLTELFSVMRRVKVLIQDCKDGSSLWSLMQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIKEQVELLHKQAKRAELQVDPRELHRREQLVQAMANNSVQNKKHKGFVDFGKVEEILSSIGLRTPSDYDGEISNLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRDGENDRNEEDCCKPLSSFLFNKVYDDNSSSSQSIMTPNVPDEFRCPISLDLIRDPVIVASGHTYDRTSIAQWINSGHHTCPKSGQRLIHTALIPNYALKSLIQQWCHDNNVPVNDPTTEGNNTNNNKKKKNSKEEAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRSVIAEVGAIPFLVTLLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASVYSLSMVDECKVQIGGRPKAIPALVGLLKEGTPIGKRDAASALFNLSVYNPNKSSVVKAGAVPVLVELLIDDKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLVADGSLRARRKADAVLRFLNRCCSQPHHSV 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2181 643 Gene3D - 322 471 IPR011989 -
Aed3g2181 643 PANTHER U BOX DOMAIN-CONTAINING 1 641 - -
Aed3g2181 643 ProSiteProfiles U-box domain profile. 238 312 IPR003613 GO:0004842|GO:0016567
Aed3g2181 643 Gene3D - 472 639 IPR011989 -
Aed3g2181 643 SMART arm_5 549 590 IPR000225 GO:0005515
Aed3g2181 643 SMART arm_5 508 548 IPR000225 GO:0005515
Aed3g2181 643 SMART arm_5 342 381 IPR000225 GO:0005515
Aed3g2181 643 SMART arm_5 424 465 IPR000225 GO:0005515
Aed3g2181 643 SMART arm_5 383 423 IPR000225 GO:0005515
Aed3g2181 643 SMART arm_5 469 507 IPR000225 GO:0005515
Aed3g2181 643 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 319 IPR013083 -
Aed3g2181 643 CDD RING-Ubox_PUB 243 285 IPR045210 -
Aed3g2181 643 SUPERFAMILY RING/U-box 228 315 - -
Aed3g2181 643 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 1 1 641 - -
Aed3g2181 643 SUPERFAMILY ARM repeat 354 632 IPR016024 -
Aed3g2181 643 SMART Ubox_2 242 305 IPR003613 GO:0004842|GO:0016567
Aed3g2181 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 394 436 IPR000225 GO:0005515
Aed3g2181 643 Pfam U-box domain 239 309 IPR003613 GO:0004842|GO:0016567
Aed3g2181 643 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 478 520 IPR000225 GO:0005515
Aed3g2181 643 MobiDBLite consensus disorder prediction 312 333 - -
Aed3g2181 643 Pfam Armadillo/beta-catenin-like repeat 509 544 IPR000225 GO:0005515
Aed3g2181 643 Pfam Armadillo/beta-catenin-like repeat 386 422 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2181 Aed-Chr3 25463702 25465633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2181 1 638 U-box Gene Family AT3G46510 38.820 2.96e-128 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2181 - - gmx:100793498 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2181 3 25463702 25465633 Aed3g2181 3 25463702 25465633 ECH