Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2178 ATGAAGGGTTATGAGCCACGTTCAAGTTCTTCTTGTGCAGCTTGCAAGTTTTTGAAGAGAAGGTGCATACCCAATTGCATATTTGCACCTTACTTTCGTTCCGATGAGTGCAAGAAATTCGCAAAGGTGCACAAGGTGTTTGGTGCGAGCAATGTGAGCAAGATCCTGGTTGAGGTCCCTGAAGAGCAGAGAGAGGACACGGTGAATTCGCTTGCTTATGAAGCTGAAGCAAGGCTCAGGGACCCCGTTTATGGATGCATTGGCGCCATTGCTCTGTTGCAGAGGAAGATGACAGTGGAGCTGAGTAATGTATTGAATGGCACCAGCTACATGTGTGAGACACCATTTAGTATAGAGACAGCAACACTACTATAG 375 0.4667 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMTVELSNVLNGTSYMCETPFSIETATLL 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2178 124 Pfam Lateral organ boundaries (LOB) domain 11 98 IPR004883 -
Aed3g2178 124 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 101 - -
Aed3g2178 124 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Aed3g2178 124 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2178 Aed-Chr3 25436051 25437272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2178 1 105 AS2 family AT3G11090 78.095 1.96e-56 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g2178 LOB 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2178 - - gmx:100777635 201.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2178 3 25436051 25437272 Aed3g2178 3 25436051 25437272 ECH