Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2175 ATGTCCATTCGTGACTCGGAATCACTGAATTGGCACTACGACACAGAACTCGACGACGAAATCCTCGAAATCCGTGGGCGCAAGCTCTTCTTCATCATCGTCCTCTTCTCCATCATCCTCCTCTTCACCGCGCTCTTCGTCTTCGCACGCCGGATCTGCCGCCACAGCACCGGCCTCCTCACGGAATCCGTCCCGCCGCGCCGCGCACTGCCGCTGTCGCCGCCGCCGGACAGCGGTCTCGACGGCGCCGCGATCAAACGGCTCCCGATCGTCCTCCACCCGCGGCGCAACCGCACGACGGCAGCGGAGGAGACGGAGTGCTGCATCTGCCTCGGTGCGTTCGCCGACGGCGAGAAGCTGAAGGTTCTGCCAGGGTGCGACCACAGCTTCCACTGCGAGTGCGTGGACAAGTGGCTCGTGAATCACTCCAATTGCCCTCTCTGCCGAGCTTCGCTCAAACTCGGTTCTTCGTTCCCCGGGATTTTGATGCAATCGCCACCCGTTAGAATTAGTGTTCCGGATTCTGAGGAAACATTGGCTCATATTTTGTTCGCATGCACTATCAGTTACGACGCTGCCTTTGTGGAGCCTCACATTCTGAGGAGATTCTTTTGTGGAGCCTCTTGTACAATGAAAAATTATTCTAGCTGCTTGCATTAA 660 0.5742 MSIRDSESLNWHYDTELDDEILEIRGRKLFFIIVLFSIILLFTALFVFARRICRHSTGLLTESVPPRRALPLSPPPDSGLDGAAIKRLPIVLHPRRNRTTAAEETECCICLGAFADGEKLKVLPGCDHSFHCECVDKWLVNHSNCPLCRASLKLGSSFPGILMQSPPVRISVPDSEETLAHILFACTISYDAAFVEPHILRRFFCGASCTMKNYSSCLH 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2175 219 SUPERFAMILY RING/U-box 99 154 - -
Aed3g2175 219 PANTHER RING-H2 FINGER PROTEIN ATL66 3 163 - -
Aed3g2175 219 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 3 163 IPR044675 -
Aed3g2175 219 SMART ring_2 107 148 IPR001841 -
Aed3g2175 219 Pfam Ring finger domain 106 149 IPR001841 -
Aed3g2175 219 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Aed3g2175 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 154 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2175 Aed-Chr3 25415498 25416385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2175 9 157 C3H Transcription Factor Family AT3G11110 43.624 7.03e-33 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2175 - - gmx:100794554 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2035 7 23128078 23128605 Aed3g2175 3 25415498 25416385 PCT