Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2173 ATGACCGGCGACGATCGCGTGAAGGGTTCGTGGAGTCCTCAGGAGGACGCGACGTTGCTGAAACTGGTGAACGAGCACGGAGCACGCAACTGGTCCGTCATAAGCGCCGGAATTCCCGGGCGTTCCGGCAAGTCGTGCCGTCTCCGGTGGTGCAACCAGCTAAGTCCGGAAGTGCAGCACCGTCCCTTCACTCCAGCGGAGGACAAGATCATCATCAAGGCGCACGACGTTCACGGTAATAAGTGGGCCACCATCTCGCGCCTCCTCCCTGGCCGCACCGACAACGCCATCAAGAACCACTGGAACTCCACGCTCCGCCGCCGTCGCGGGGCAGATCAGTCCTCCTCCTCCTCGGCATCTCCGCCACCGTCCAAACGTCCCTCTTCGTTGTTGTTTGAAACGCTTCACCCTTTCAAAAAGCAGTGCATTGAAAAGGAAAACGAGGAAGAGCGAGTGCTGAGTCCCGTTACGACGTCGTTGAGCCTTTTCCCCCCAGGGGAAAAATCAGAAGAAGAAGAAGAAGATGAAGAAAACCAGAAAGAAGAGTTTGAAGTGAACGTTAATAATGAGAAGATTCAGAATCAGAATTGCTTTATGCAGATGATGCAGCGGATGATAGCGGAAGAAGTTAGAAATTACATGGAGAGTTTGCGCAATTGCCAAAGGGACGGTGGGTTAGATCTTCATCCAATGCTTCCAAAATAA 705 0.5333 MTGDDRVKGSWSPQEDATLLKLVNEHGARNWSVISAGIPGRSGKSCRLRWCNQLSPEVQHRPFTPAEDKIIIKAHDVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRRGADQSSSSSASPPPSKRPSSLLFETLHPFKKQCIEKENEEERVLSPVTTSLSLFPPGEKSEEEEEDEENQKEEFEVNVNNEKIQNQNCFMQMMQRMIAEEVRNYMESLRNCQRDGGLDLHPMLPK 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2173 234 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Aed3g2173 234 SMART sant 7 56 IPR001005 -
Aed3g2173 234 SMART sant 59 107 IPR001005 -
Aed3g2173 234 MobiDBLite consensus disorder prediction 146 183 - -
Aed3g2173 234 Coils Coil 166 193 - -
Aed3g2173 234 MobiDBLite consensus disorder prediction 108 127 - -
Aed3g2173 234 ProSiteProfiles Myb-like domain profile. 3 54 IPR001005 -
Aed3g2173 234 MobiDBLite consensus disorder prediction 99 130 - -
Aed3g2173 234 CDD SANT 10 52 IPR001005 -
Aed3g2173 234 SUPERFAMILY Homeodomain-like 6 101 IPR009057 -
Aed3g2173 234 Gene3D - 7 59 - -
Aed3g2173 234 Gene3D - 61 129 - -
Aed3g2173 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Aed3g2173 234 PANTHER OS01G0850400 PROTEIN 5 205 - -
Aed3g2173 234 Pfam Myb-like DNA-binding domain 62 104 IPR001005 -
Aed3g2173 234 Pfam Myb-like DNA-binding domain 8 54 IPR001005 -
Aed3g2173 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 54 IPR017930 -
Aed3g2173 234 CDD SANT 62 105 IPR001005 -
Aed3g2173 234 PANTHER MYB PROTEIN-RELATED 5 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2173 Aed-Chr3 25408471 25409175 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2173 5 218 MYB Transcription Factor Family AT5G67300 39.643 6.62e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g2173 Myb_DNA-binding 1.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2173 - - gmx:778069 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2173 3 25408471 25409175 Aed3g2173 3 25408471 25409175 ECH