Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2172 ATGGAAAGTTACTATTATTCTGGCTGGCCTCTTGCTCAATGCATTAACAACAACTCTGCACCAAACAGTGATCAATTATTATCTCCTTTTTCTTCACTCCCTCTTATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCCATGGATGTCAGCAAAGCCATAACTGTTCCAACTGAAACTGATGAAGTAACAATTGACTACCACCAAGCTCATCAAGATAATAAAGTGAACAACAACAACAACAACATCGTAATCAAAGCTTCAGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAGCTCATCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAAGCTGACATAGCCAGTGTTGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCAAAGGAAGAGAACAATAATACTAGTAGTAGTGTTTGTCTTAGCACTCTCAAACAGTCCCTTAAATCTTCTGTGAACAAAATTGCTTCGTTAAACGTTGCAACAAATTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACGTACAATAA 585 0.4017 MESYYYSGWPLAQCINNNSAPNSDQLLSPFSSLPLMDKAALLGSVVDHVKDLKRKAMDVSKAITVPTETDEVTIDYHQAHQDNKVNNNNNNIVIKASVCCDDRPELFPELIQVLKGLRLTAVKADIASVGGRIKSILVLCSKEENNNTSSSVCLSTLKQSLKSSVNKIASLNVATNCPTRSKRQRFFLPSHYVQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2172 194 PANTHER TRANSCRIPTION FACTOR BHLH30 36 193 IPR045847 GO:0003700|GO:0006355
Aed3g2172 194 PANTHER TRANSCRIPTION FACTOR BHLH51 36 193 - -
Aed3g2172 194 CDD ACT_UUR-ACR-like 97 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2172 Aed-Chr3 25404470 25407210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2172 21 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 43.103 2.36e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2172 - - gmx:100306102 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2172 3 25404470 25407210 Aed3g2172 3 25404470 25407210 ECH
Aed7g2038 7 23136327 23137499 Aed3g2172 3 25404470 25407210 PCT