Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2166 ACAAAAAGGAAGGAACAGAAGGACAGTAGTGGACTAGCGCCTGTTGCTGGTGGGCTGACAATAAAAAGGGCAACTCATACCCCCCTTTCTCCCTCATCTTCGCTCAATCGAGGTCTTCTCGATTTTAATCAAATCTTCTTCTCTACAACGCTCTCTTGCAACCAATCTTCTACTTGTTCCACTCTACTACTACTACTACTCAAAAGGATTTGGGACATGTGCGGTGAATCAAAAAGTAAACTTTCTTCCCCAGCCCTCGTTATGGAGAGCAATTTTCAGAAGCAGAATCTAGATGGTCTCTACAACTTCTCGGCTTTGCTTGAATTGTCTGCTTCCGATGATTTTGAAGCTTTCAAAAGAGAAGTTGGTGAGAAGGGATTGGATGTCAACGAGGCAGGCTTTTGGTATGGTAGAAGAATTGGGTCAAAGAAGATGGGATCTGAAACGAGGACCCCTCTCATGATTGCTTCTCTGTTTGGAAGCACTAAGGTTCTCAATTGTATTCTTGAGACAGGAGGTGTTGATGTGAACAGGGTCTGTGGTTCTGATATGGCCACTGCTCTCCACTGTGCTGTTGCTGGAGGCTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTGGATGCTGGGGCCGATGCTGAGTCCCTTGATGCTGGCGGCAACAAGCCGGTTAATCTGATTGCTCCCGCCTTCGATACTCAGTCCAAATCGCGAAGGAAGGCCATGGAATTGTTTCTGATGGGTGGAGGGGAAAGAGATGAACTCATGAGCCAGGAGATGGAGCTGCAGATGTTTTCTGTTCCGGAGAAAAAGGAAGGAAGTGATAAGAAAGAATACCCTGTTGACATATCGTTGCCTGACATCAACAACGGTGTGTATGGATCAGATGAGTTTAGGATGTATAGCTTCAAGGTGAAGCCTTGCTCAAGGGCTTACTCCCATGACTGGACTGAGTGCCCATTCGTTCATCCAGGGGAGAACGCGAGGAGGAGAGACCCAAGGAAATACCCTTACAGCTGTGTTCCTTGCCCAGAGTTTCGCAAAGGGACATGCCAGAAGGGTGATTCCTGTGAGTATGCTCATGGTGTTTTTGAGTCCTGGCTACATCCTGCTCAATACAGAACAAGGCTTTGCAAGGATGAGACCGGCTGCAGCAGAAAAGTCTGCTTCTTTGCTCACAAACCCGAAGAGCTACGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCATCACCAAAATCCTATTCAGCTAGTGGACTTGACATGACTGTGATGAGTCCATTGGCTCTCAGTTCAACATCTTTGCCTATGCAAACTGTTTCAACCCCACCCATGTCTCCCTTGGCATCTCCCAAGAGTGGAAACTTGTGGCAGAACAAAATAAACCTTACTCCACCATCATTGCAGCTCCCAGCATCTGCTGACCCTTCTGTATTATCTCAACTGCACGGGCTTTCGGTGCAGCCTTCAACACCCACACAAAGTGGGCTTCAGATGCGCCAAAACATGAACCACCTCCGTGCTAGTTATCCATCCAACATCCCTTCCTCTCCTGTGAGGATGCCCTCACCTTATGGGTTTGATTCATCAGCTGCAGTGGCAGCTGCAGTGATGAATTCAAGGTCCGCCGCCTTCGCTAAGCGAAGCCAAAGTTTCATTGATCGTGGAGCTGCAACCCACCATATTGGGCTGTCTTCAGCTTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGACTGGAGTTCCCCTACTGGGAAACTGGATTGGGGCGTAAACGGAGACGAGCTGAACAAGCTGAGGAAATCTGCTTCCTTTGGGTTCAGAAACAATGGGGGAACTGCATCATCATCCCCCATAGCACAGCCACGATTTGGTGCTGAGCCAGATGTCTCGTGGGTTCATTCATTGGTTAAAGATGTTCCCTCTGAGAGTGCTGAGAGGCAACAATATGATCTCAGCAAAGAGATGTTTTCACCATGGGTGGAGCAGCTGTATATAGAGCAGGAGCAGATGGTAGCATGA 2025 0.4849 TKRKEQKDSSGLAPVAGGLTIKRATHTPLSPSSSLNRGLLDFNQIFFSTTLSCNQSSTCSTLLLLLLKRIWDMCGESKSKLSSPALVMESNFQKQNLDGLYNFSALLELSASDDFEAFKREVGEKGLDVNEAGFWYGRRIGSKKMGSETRTPLMIASLFGSTKVLNCILETGGVDVNRVCGSDMATALHCAVAGGSESSLEIVKLLLDAGADAESLDAGGNKPVNLIAPAFDTQSKSRRKAMELFLMGGGERDELMSQEMELQMFSVPEKKEGSDKKEYPVDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTVMSPLALSSTSLPMQTVSTPPMSPLASPKSGNLWQNKINLTPPSLQLPASADPSVLSQLHGLSVQPSTPTQSGLQMRQNMNHLRASYPSNIPSSPVRMPSPYGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHIGLSSASNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGGTASSSPIAQPRFGAEPDVSWVHSLVKDVPSESAERQQYDLSKEMFSPWVEQLYIEQEQMVA 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2166 674 ProSiteProfiles Ankyrin repeat region circular profile. 183 217 - -
Aed3g2166 674 SMART c3hfinal6 372 395 IPR000571 GO:0046872
Aed3g2166 674 SMART c3hfinal6 337 363 IPR000571 GO:0046872
Aed3g2166 674 Gene3D - 339 400 - -
Aed3g2166 674 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 91 473 - -
Aed3g2166 674 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 472 673 - -
Aed3g2166 674 PANTHER UNKEMPT FAMILY MEMBER 91 473 IPR045234 -
Aed3g2166 674 PANTHER UNKEMPT FAMILY MEMBER 472 673 IPR045234 -
Aed3g2166 674 SUPERFAMILY Ankyrin repeat 99 237 IPR036770 -
Aed3g2166 674 ProSiteProfiles Ankyrin repeat profile. 183 218 IPR002110 GO:0005515
Aed3g2166 674 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 362 IPR000571 GO:0046872
Aed3g2166 674 SMART ANK_2a 183 215 IPR002110 GO:0005515
Aed3g2166 674 SMART ANK_2a 148 178 IPR002110 GO:0005515
Aed3g2166 674 Pfam Ankyrin repeats (3 copies) 146 214 IPR002110 GO:0005515
Aed3g2166 674 ProSiteProfiles Zinc finger C3H1-type profile. 337 364 IPR000571 GO:0046872
Aed3g2166 674 Gene3D - 90 246 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2166 Aed-Chr3 25334464 25337414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2166 101 473 C2H2 Transcription Factor Family AT5G12850 48.786 4.37e-124 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed3g2166 Ank_2 2.8e-06 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2166 - - gmx:100783376 973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2166 3 25334464 25337414 Aed3g2166 3 25334464 25337414 ECH