Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2147 ATGGCTTCATCTTACCGTGACCGTACGTCAGAGTTCCGGTTGCTGTCGGAGACTCTGAAGAAGATCGGAGGAGGAGGGACCGAACCTCCGATTCAACCCGAGAATGCTCCTTCTACCTCTCAGGATTCCTATTCGAGATCCGAATTCAACCGAAAGGCCTCACGAATCGGCTTGGGGATCCACGAAACCTCGCAGAAGATCGCGAGGCTCGCGCAGCTGGCGAGGAAATCGTCCATGTTCAACGATCCCGCCGTGGAGATTCAGGAGCTGACTGTTCTTATTAAGAACGAGATCACGGCGCTGAACTCGGCTCTTTCCGATTTGCAAACGATTCAGAACATGGATATGGCTGACGGAGGCTACTCGCAGGATAGGATTGTGCATTCCACCGCGGTTTGTGATGACTTGAAGGGAAAACTCATGGGAGCTACGAAGCACCTTCAAGATGTCTTAACTGTTAGAACAGAGAATATCAAGGCTCATGAGAACAGGAGGCAGATATTTTCCAAGAATGCATCAAGAGAGAACCCTTTCCAGCATCAGCCAAAACCAGCTACTGAGCCACCACCTTGGTCAAATTCTTCGAATGCATCTGAGAGTTTGCAACAAGAATCAGCATTACCATCAAAGGGAGCTCCTGTTAGCAATCAACTAAGACGAAGGTTGGCTGTGGACAACGCACCATCTCAGCAAATGGAAATGTCTATGGTACAGCAGGTTGTGCCTCGGCATGAAAACTATGCTCAAAGCCGGGCAACTGCTCTGCATAATGTAGAATCTACTATCACGGAACTTAGTGGGATTTTCACACATTTGGCTACAATGGTTGCCCATCAAGGGGAGCTTGCTATCAGGATTGATGATAATATGGATGAATCATTGGCAAATGTTGAAGGAGCTCACAGTTCTTTATTGAGGTATCTCAACCGAATATCATCAAATAGGTGGCTTATGATAAAGATATTTGCCATTCTGATACTTTTCCTCATGATCTTCATATTCTTCGTCGCCTAA 1014 0.4684 MASSYRDRTSEFRLLSETLKKIGGGGTEPPIQPENAPSTSQDSYSRSEFNRKASRIGLGIHETSQKIARLAQLARKSSMFNDPAVEIQELTVLIKNEITALNSALSDLQTIQNMDMADGGYSQDRIVHSTAVCDDLKGKLMGATKHLQDVLTVRTENIKAHENRRQIFSKNASRENPFQHQPKPATEPPPWSNSSNASESLQQESALPSKGAPVSNQLRRRLAVDNAPSQQMEMSMVQQVVPRHENYAQSRATALHNVESTITELSGIFTHLATMVAHQGELAIRIDDNMDESLANVEGAHSSLLRYLNRISSNRWLMIKIFAILILFLMIFIFFVA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2147 337 CDD SNARE_syntaxin5 248 333 - -
Aed3g2147 337 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Aed3g2147 337 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Aed3g2147 337 MobiDBLite consensus disorder prediction 20 48 - -
Aed3g2147 337 Gene3D - 42 300 - -
Aed3g2147 337 PANTHER SYNTAXIN 4 336 IPR045242 -
Aed3g2147 337 MobiDBLite consensus disorder prediction 32 47 - -
Aed3g2147 337 SMART tSNARE_6 240 307 IPR000727 -
Aed3g2147 337 Pfam SNARE domain 282 333 IPR000727 -
Aed3g2147 337 SUPERFAMILY t-snare proteins 45 300 IPR010989 GO:0016020|GO:0016192
Aed3g2147 337 MobiDBLite consensus disorder prediction 161 216 - -
Aed3g2147 337 MobiDBLite consensus disorder prediction 190 212 - -
Aed3g2147 337 PANTHER SYNTAXIN-31 4 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2147 Aed-Chr3 25195584 25200449 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2147 1 337 SNARE and Associated Proteins AT5G05760 66.667 2.62e-152 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2147 K08490 - gmx:100777383 564.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2147 3 25195584 25200449 Aed3g2147 3 25195584 25200449 ECH