Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2145 ATGGCACCAAAACAGACCAAGGCTGAGAAGAAGATCGTTTACGATGCGAAGCTGTGCGACCTTATCGACGAGTACGGCCAGATCCTCGTTGTCAACGCCGATAACGTTGGATCGAAACAGCTCCAGAACATTCGCAAGGGTCTTCGTGGCGACTCTGTCGTCCTCATGGGGAAGAACACCATGATGAAGCGCTCTGTCAGGATTCACGCTGAGAAAACCGGCAACAACGCCTATCTCAACCTTCTTCCACTCCTTATCGTTAGTTTCACTCTCCCAATTCTATTTTTCAATGTTAGTTTTGATGTTTTTATTATTACTGGATTGAGAGAACGTGTTTTGAATCAGGGCAATGTGGGATTGATTTTCACTAAAGGTGACTTGAAGGAGGTCAGTGAGGAGGTTGCTAAGTACAAGGTCGGAGCCCCTGCTCGTGTTGGTTTGGTTGCCCCAATTGATGTTGTTGTTCCTCCTGGCAACACAGGGCTCGACCCATCTCAGACCTCTTTCTTCCAGGTTCTCAACATTCCTACCAAGATTAACAAGGGCACTGTGGAAATCATTACTGCAGTGGAACTCATTAAGAAGGGAGACAAGGTTGGGTCTTCTGAAGCTGCATTGCTTGCCAAGCTAGGTATAAGGCCCTTCTCATATGGGCTTGTGGTTCTCTCTGTTTATGATAATGGTTCAGTGTTCAGCCCTGAGGTTCTCGATCTCACCGAGGATGACCTTCTTGAGAAGTTTGCTGCTGGTGTTTCAATGGTGACTTCACTTTCACTGGCTATCTCATACCCAACACTTGCTGCTGCACCACACATGTTCATCAATGCCTACAAGAACGTTCTTGCTGTTGCTGTTGAGACAGAGTATTCTTTCCCTGAGGCAGACAAGGTCAAGGAGTACCTAAAGGACCCAAGTAAATTTGCTGTTGCTGCTGTTGCTGCTCCTGTGGCTTCTTCTGGTGGCGCTCCAGCTGCCTCTTCCAAGGAAGAGGAGAAGAGGGAAGAACCAGCCGAAGAATCAGATGATGACATGGGTTTCAGTCTGTTTGACTAA 1053 0.4739 MAPKQTKAEKKIVYDAKLCDLIDEYGQILVVNADNVGSKQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHAEKTGNNAYLNLLPLLIVSFTLPILFFNVSFDVFIITGLRERVLNQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLLEKFAAGVSMVTSLSLAISYPTLAAAPHMFINAYKNVLAVAVETEYSFPEADKVKEYLKDPSKFAVAAVAAPVASSGGAPAASSKEEEKREEPAEESDDDMGFSLFD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2145 350 SUPERFAMILY Ribosomal protein L10-like 8 163 IPR043141 -
Aed3g2145 350 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 1 88 - -
Aed3g2145 350 MobiDBLite consensus disorder prediction 335 350 - -
Aed3g2145 350 Gene3D - 6 238 IPR043141 -
Aed3g2145 350 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0-1 113 350 - -
Aed3g2145 350 Pfam Ribosomal protein L10 8 137 IPR001790 -
Aed3g2145 350 PIRSF L10E 1 350 IPR030670 GO:0042254
Aed3g2145 350 MobiDBLite consensus disorder prediction 316 350 - -
Aed3g2145 350 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 113 350 - -
Aed3g2145 350 Pfam 60s Acidic ribosomal protein 263 349 - -
Aed3g2145 350 Gene3D - 143 214 IPR043164 -
Aed3g2145 350 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P0 1 88 - -
Aed3g2145 350 Pfam Insertion domain in 60S ribosomal protein L10P 143 212 IPR040637 -
Aed3g2145 350 CDD Ribosomal_P0_L10e 9 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2145 Aed-Chr3 25189520 25191487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2145 1 349 Cytoplasmic Ribosomal Protein Gene Family AT2G40010 77.364 0.0 506
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2145 K02941 - gmx:100777482 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2145 3 25189520 25191487 Aed3g2145 3 25189520 25191487 ECH