Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2140 ATGGAAGCTCCAAGCATGGCGGCGAAGGAGCGCACAGTGTTGCAGTTCTCTTCTTCACAGAGCCTTTCGGCGAAGGTTCACCCTCTCGTTATCTTCAACATCTGCGATTGCTTCGTTCGCCGTCCCGACCAAGCGGAACGCGTCATCGGAACGCTACTCGGCTCCATTCTCCCTGACGGTACCGTCGATGTTCGCAATTCTTACGCCGTTCCCCACAGCGAATCCGTCGATCAGGTCGCTCTTGATATTGAGTATCACCATAGTATGTTATTATCTCACCAGAAGGTGAACCCAAAGGAAGTTATAGTTGGATGGTATTCAACTGGTCTTGGAGTAACCGGTGGTAGTGCATTAATCCATGAATTTTATTCTCGAGAAGTACCCAATCCTATTCATTTGACTGTTGACACGGGATTCACAAAGGGAGCGGGTAATGTAAAAGCATATGTTTCAAGCAATTTATCTCTTGGAGATCGTCAAATTGCGGCACAGTTTCAAGAAATTCCTTTAGATCTTCGTATGCTTGAAGCTGAGCGCATTGGATTTGATACTCTGAAGGCAACTGCTGTGGACAAAATCCCCTCTGATTTAGAAGGGATGGAAGCATCGATGGGACATCTATTAGCCTTGATTGATGACATCTACAAATATGTTGATGATGTTGTGGAAGGGCGTATTGAGGCAGACAACAAAATTGGGAGAATTATATCAGATGCTGTAGGTTCCCTTCCCAAATTGCCCTCATCAGCTTTTGAGAAGCTTGTGAATGACAGCTTGCAGGATCACTTGCTCTTACTATATTTATCAAGCATCACTAGGACACAGCTTGGCCTGGCAGAAAAGTTGAATACTGCTGCTCAAATTTTGTGA 870 0.4517 MEAPSMAAKERTVLQFSSSQSLSAKVHPLVIFNICDCFVRRPDQAERVIGTLLGSILPDGTVDVRNSYAVPHSESVDQVALDIEYHHSMLLSHQKVNPKEVIVGWYSTGLGVTGGSALIHEFYSREVPNPIHLTVDTGFTKGAGNVKAYVSSNLSLGDRQIAAQFQEIPLDLRMLEAERIGFDTLKATAVDKIPSDLEGMEASMGHLLALIDDIYKYVDDVVEGRIEADNKIGRIISDAVGSLPKLPSSAFEKLVNDSLQDHLLLLYLSSITRTQLGLAEKLNTAAQIL 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2140 289 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 22 127 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aed3g2140 289 Gene3D Cytidine Deaminase, domain 2 11 190 - -
Aed3g2140 289 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 22 285 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed3g2140 289 CDD MPN_eIF3f 25 282 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed3g2140 289 Pfam Maintenance of mitochondrial structure and function 176 282 IPR024969 -
Aed3g2140 289 ProSiteProfiles MPN domain profile. 24 155 IPR037518 -
Aed3g2140 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F 18 288 IPR027531 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Aed3g2140 289 SMART pad1_6 23 154 IPR000555 GO:0005515|GO:0008233|GO:0008237
Aed3g2140 289 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 18 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2140 Aed-Chr3 25157297 25160106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2140 7 289 Eukaryotic Initiation Factors Gene Family AT2G39990 74.227 1.07e-152 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2140 K03249 - gmx:100786716 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2140 3 25157297 25160106 Aed3g2140 3 25157297 25160106 ECH