Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2139 ATGGAGGAGGGCATGTCAGGCTTTTGCATAAGATCATCATCAGGAAGTGGCAGCACTAACACTAAGTGTGGGCGTTGGAATCCGACCACTGAACAAGTTAAACTCTTAACTGAACTCTTCAGGTCAGGGCTCCGAACCCCAAGCACTGACCAGATTCAAAAGATCTCCACTCAGCTCAGCTTTTATGGTAAGATTGAGAGCAAGAATGTTTTCTATTGGTTTCAGAACCATAAGGCCAGGGAAAGACACAAGCGCCGCCGCAAGGATCTCTCCATCATATCTACACATAATAACTCTATCAATGCACCTTCTACACTAAGTGTTGCTGAGATGTTTCAAGTTTCAGAGCCAGATAATAGGGTGATTGAGACTCTTCAACTCTTCCCCTTAAACTCCTTTGGTGAATCTGAACCAGAGAAGCTGAGCTTGCATGCAAATGAATGTAGGGTTGATAATACAATGTTTTCATACACGTTGGGTGAACAAATGGAGCACCCACCATTAGACCTGCGCTTGAGCTTTCTGTAA 528 0.4413 MEEGMSGFCIRSSSGSGSTNTKCGRWNPTTEQVKLLTELFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERHKRRRKDLSIISTHNNSINAPSTLSVAEMFQVSEPDNRVIETLQLFPLNSFGESEPEKLSLHANECRVDNTMFSYTLGEQMEHPPLDLRLSFL 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2139 175 MobiDBLite consensus disorder prediction 1 24 - -
Aed3g2139 175 Gene3D - 22 91 - -
Aed3g2139 175 Pfam Homeodomain 23 83 IPR001356 GO:0003677
Aed3g2139 175 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 164 IPR044555 GO:0003700|GO:0099402
Aed3g2139 175 MobiDBLite consensus disorder prediction 9 24 - -
Aed3g2139 175 CDD homeodomain 25 85 IPR001356 GO:0003677
Aed3g2139 175 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 164 - -
Aed3g2139 175 ProSiteProfiles 'Homeobox' domain profile. 19 84 IPR001356 GO:0003677
Aed3g2139 175 SUPERFAMILY Homeodomain-like 15 86 IPR009057 -
Aed3g2139 175 SMART HOX_1 21 88 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2139 Aed-Chr3 25153719 25154381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2139 16 175 Wox Gene Family AT3G11260 59.429 8.91e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Aed3g2139 Homeodomain 6.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2139 - - gmx:100820304 263.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed7g2077 7 23468484 23469033 Aed3g2139 3 25153719 25154381 PCT