Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2136 ATGCCTTCTCCTGCACCCACCTTGCTCTCCAAATGCACCGTCTTCCCAGACCAAAAGTCTACTCTCGGAAACCTCAAACTCTCCGTTTCGGACCTCCCCATGTTGTCCTGCCACTACATCCAAAAAGGTTGCCTCTTTACCCAACCCAATCTCCCACTCCACTCTCTAATCCCTATCCTCAAATCCGCACTCTCTCGCACACTCTCTCTCTTTCCCCCTCTCGCCGGCCGTTTATTCACCGATTCTAACGGCTACGTCTACATCTCCTGCAACGATGCCGGCGTCGATTTCATTCACGCCAATGCCACTTCCCTTCGCATCTGCGACTTGCTCTCCCCACTCGATGTCCATGAGTCATTCAAGGAATTCTTCGCCTTCGATAGGAAAGTCAGCTACACCGCTCACTTCTCCCCGATTCTCGCCGTTCAGGTCACTCAACTCGCCGACGGAATCTTCATTGGCTGCGCCGTCAATCACGCCGTCACCGACGGCACCTCCTTCTGGAATTTCTTCAACACCTTCGCTCAGCTCTCCAGAGGTGCCAACAACTGCATCCGCAATGTACCAGACTTCAGCCGCGACTCCACTCTTATCTCCGACGCCGTTCTCCGGTTACCGGAGGGCGGTCCTCAGGTCACGTTCGACGCCAACGCGCCTCTGCGCGAGAGAATTTTCAGCTTCAGCCGCGAAGCCATTCAGAAGCTCAAAGCCAGAGCCAACAACCGCCGCTGGCCTGAAAACAACAACAACAACATCAACATCAACGCCGCGGAGTTGTTGTGGAAGCAAAGCAACGACAATCAACTAAAGGAGTACAGGGCCACGACGATTCTCGAGAACTTGTTCAAGGTGAATTCGAATTCGAATTCGATTTCTAAACAGCAAACGGTCACCGAAACGGTGGAGATTTCGTCGTTTCAATCGGTGTGTGCGTTACTGTGGCGCGCGGTGACGCGGGCGAGGAAATTTCCCGCGTCGAAAACGACGACGTTTAGAATGGCGGTTAACTGCCGTCACCGGATAGAGCCGAAATTGGAAGCTTACTACTTCGGGAACGCCATTCAGAGCGTGCCTACTTATGCTTCCGCGGGTGACGTGTTATCCAGGGATCTACGGTGGTGCGCGGAGCAGCTGAACAAAAACGTGAAGGCGCACGATGACACTATGGTGCGAAAATTCGTAGACGATTGGGAGCGGAACCCGAGGTGCTTCCCACTTGGGAACCCTGACGGTGCATCCATCACAATGGGCAGTTCTCCCAGGTTTCCAATGTACGATAACAATTTCGGGTGGGGGAGACCTCTCGCGGTGCGAAGTGGAAGAGCCAACAAATTCGACGGTAAGATCTCTGCGTTTCCAGGAAGAGATGGAACAGGGACCGTTGATTTGGAGGTTGTTCTAGCCCCCGAAACCATGGAGGCGCTAGAGTCCGATCCCGAATTCATGAAATATGCAACGTGTCAATTATGA 1470 0.5333 MPSPAPTLLSKCTVFPDQKSTLGNLKLSVSDLPMLSCHYIQKGCLFTQPNLPLHSLIPILKSALSRTLSLFPPLAGRLFTDSNGYVYISCNDAGVDFIHANATSLRICDLLSPLDVHESFKEFFAFDRKVSYTAHFSPILAVQVTQLADGIFIGCAVNHAVTDGTSFWNFFNTFAQLSRGANNCIRNVPDFSRDSTLISDAVLRLPEGGPQVTFDANAPLRERIFSFSREAIQKLKARANNRRWPENNNNNININAAELLWKQSNDNQLKEYRATTILENLFKVNSNSNSISKQQTVTETVEISSFQSVCALLWRAVTRARKFPASKTTTFRMAVNCRHRIEPKLEAYYFGNAIQSVPTYASAGDVLSRDLRWCAEQLNKNVKAHDDTMVRKFVDDWERNPRCFPLGNPDGASITMGSSPRFPMYDNNFGWGRPLAVRSGRANKFDGKISAFPGRDGTGTVDLEVVLAPETMEALESDPEFMKYATCQL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2136 489 Pfam Transferase family 8 482 - -
Aed3g2136 489 Gene3D - 219 480 IPR023213 -
Aed3g2136 489 PANTHER OS01G0854000 PROTEIN 7 485 - -
Aed3g2136 489 Gene3D - 7 204 IPR023213 -
Aed3g2136 489 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 7 485 - -
Aed3g2136 489 SUPERFAMILY CoA-dependent acyltransferases 35 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2136 Aed-Chr3 25145348 25146817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2136 59 476 Monolignol Biosynthesis Gene Families AT5G48930 27.907 5.83e-36 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2136 - - gmx:100500612 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2136 3 25145348 25146817 Aed2g1190 2 10198489 10199925 ECH
Aed3g2136 3 25145348 25146817 Aed3g2136 3 25145348 25146817 ECH
Aed7g2079 7 23480899 23483039 Aed3g2136 3 25145348 25146817 PCT