Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2131 ATGGAATTGGAAACCCTCCACCACCCTTGTTTCATGCCAAATTCAAATTGGATTGTGCAAGAGAGCCACAGCACAAAATGGACTAGAGAAGATAACAAGATGTTTGAAAGTGCCCTTGCTATATATGACAAGGACACTCCAGATAGATGGTTTAAGGTGGCAGCTATGATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAGTATAGGGAACTGGAAGAAGATGTGAGTGAAATTGAAGCAGGGCGTGTTCCAATTCCTGGCTATCTTGCCTCTTCTTTCTCCTTTGATCTGGTTGAACACCACAACTATGATGGATGCAGAAGAAGGCTTGCACCTGTCAGAGGTTCTGATCAAGAGAGAAAGAAAGGAGTCCCATGGACTGAAGATGAACACAGACGTTTTCTGAAGGGACTTTTAAAGTATGGTAAAGGAGACTGGAGAAATATCTCTCGCAATTTTGTGGTCACAAAGACTCCAACCCAAGTTGCTAGCCATGCACAAAAGTACTACATAAGGCAAAAGGTTTCTGGAGGAAAAGATAAAAGAAGACCAAGCATCCATGATATAACCACTGTTAATCTTACAGAAACAGCTGAATCAGATAAGAACAACAAGCCTCAGTTATTTCCCATGATTACACCACAGCAGAAGCTGAATAGCAGCCACTATAATGATGGATCATTCATGGTTTTCAACCCAAATAGTGATGACTTGTTTGTGTCATCTTCATCTGATATCACTTCCATGGCCCTGAAAATGCAAGGCCAGGATCTCTATGACTGTGCTTTTCATGAGGCTTATGCCAAGGTAAAAGTTCAAGGTTTCAGCATGGCTCCTAGAGACTTCAATAATGAAGCTGTTTTTGGTATTCATGCACTGTAA 885 0.4169 MELETLHHPCFMPNSNWIVQESHSTKWTREDNKMFESALAIYDKDTPDRWFKVAAMIPGKTVFDVIKQYRELEEDVSEIEAGRVPIPGYLASSFSFDLVEHHNYDGCRRRLAPVRGSDQERKKGVPWTEDEHRRFLKGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKVSGGKDKRRPSIHDITTVNLTETAESDKNNKPQLFPMITPQQKLNSSHYNDGSFMVFNPNSDDLFVSSSSDITSMALKMQGQDLYDCAFHEAYAKVKVQGFSMAPRDFNNEAVFGIHAL 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2131 294 SUPERFAMILY Homeodomain-like 121 175 IPR009057 -
Aed3g2131 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 119 175 IPR017930 -
Aed3g2131 294 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 275 IPR043363 -
Aed3g2131 294 CDD SANT 126 170 IPR001005 -
Aed3g2131 294 Gene3D - 125 176 - -
Aed3g2131 294 Pfam Myb-like DNA-binding domain 126 170 IPR001005 -
Aed3g2131 294 Gene3D - 19 86 - -
Aed3g2131 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 122 174 IPR006447 GO:0003677
Aed3g2131 294 SMART sant 123 173 IPR001005 -
Aed3g2131 294 SMART sant 23 75 IPR001005 -
Aed3g2131 294 ProSiteProfiles SANT domain profile. 127 175 IPR017884 -
Aed3g2131 294 SUPERFAMILY Homeodomain-like 25 79 IPR009057 -
Aed3g2131 294 CDD SANT 26 72 IPR001005 -
Aed3g2131 294 ProSiteProfiles Myb-like domain profile. 119 171 IPR001005 -
Aed3g2131 294 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 3 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2131 Aed-Chr3 25102943 25105270 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g2131 Myb_DNA-binding 6.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2131 - - gmx:778039 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2131 3 25102943 25105270 Aed2g1191 2 10243536 10244003 ECH
Aed9g1974 9 23056039 23058682 Aed3g2131 3 25102943 25105270 ECH
Aed2g1191 2 10243536 10244003 Aed3g2131 3 25102943 25105270 ECH
Aed3g1828 3 22729269 22731921 Aed3g2131 3 25102943 25105270 ECH
Aed4g2280 4 25365920 25368601 Aed3g2131 3 25102943 25105270 ECH
Aed3g2131 3 25102943 25105270 Aed3g2131 3 25102943 25105270 ECH
Aed7g2083 7 23523316 23524966 Aed3g2131 3 25102943 25105270 PCT