Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2125 ATGTCTTTTATTGGCACTCAACAAAAGTGCAAGTCTTGTGACAAAACGGTGTACCCCGTTGATCAGTTATCTGCTGATGGCACTGCTTACCATAAAGCTTGCTTCAAGTGCTCTCATTGCAAAGGAACATTAAAGCTCAGCAACTATTCCTCCATGGAAGGTGTTCTTTACTGTAAGCCTCATTATGAGCAACTCTTCAAGGAGACAGGATCTTTCAAGAAGAACTTCCAGTCAGGTACGTCTTCTTCTTTCAGGATAGAGTCTACAAGGTCCCCTAGTAAAGCTGCTAGCATGTTTTCTGGGACCCAAGAAAAGTGTGCTACATGTGGCAAAACTGCTTATCCGTTGGAGAAGGTAACAGTGGAAGGTCAGGCCTATCACAAATCGTGTTTCAAATGTTCACATGGTGGCTGTCCCATAACCCCATCCAATTATGCAGCCCTTGAGGGCGTTTTGTATTGCAAGCACCATTTCTCCCAGCTTTTTAAGGAGAAAGGGAGCTATAATCATCTTCTTAAGTCTGCATCAAACAAACGGGCACCAAACTCTGTTCCACAAGCGTGA 564 0.4397 MSFIGTQQKCKSCDKTVYPVDQLSADGTAYHKACFKCSHCKGTLKLSNYSSMEGVLYCKPHYEQLFKETGSFKKNFQSGTSSSFRIESTRSPSKAASMFSGTQEKCATCGKTAYPLEKVTVEGQAYHKSCFKCSHGGCPITPSNYAALEGVLYCKHHFSQLFKEKGSYNHLLKSASNKRAPNSVPQA 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2125 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Aed3g2125 187 PANTHER LIM DOMAIN-CONTAINING PROTEIN WLIM2B 1 186 - -
Aed3g2125 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Aed3g2125 187 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Aed3g2125 187 PANTHER OS06G0237300 PROTEIN 1 186 IPR045268 GO:0051015
Aed3g2125 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Aed3g2125 187 Gene3D Cysteine Rich Protein 100 170 - -
Aed3g2125 187 Gene3D Cysteine Rich Protein 4 74 - -
Aed3g2125 187 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Aed3g2125 187 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Aed3g2125 187 SMART lim_4 9 61 IPR001781 -
Aed3g2125 187 SMART lim_4 105 157 IPR001781 -
Aed3g2125 187 CDD LIM2_SF3 106 166 - -
Aed3g2125 187 Pfam LIM domain 106 161 IPR001781 -
Aed3g2125 187 Pfam LIM domain 10 65 IPR001781 -
Aed3g2125 187 CDD LIM1_SF3 6 68 - -
Aed3g2125 187 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2125 Aed-Chr3 25079595 25080887 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Aed3g2125 LIM 2.2e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2125 K09377 - gmx:100807765 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2125 3 25079595 25080887 Aed3g2125 3 25079595 25080887 ECH