Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2118 ATGACCGAAGAAGACCGCTCCGCCGAGGAAACCGTCCGCTATGGCGTCGCCGCGACGGAGCTCGGCGGCGAGGAGGTGGACCTCGCGGATGTGACGGAGGTCGGTGAAGGTTCCGTCGCGAGAAGAGTGAGGGGACCGTGGTCGCCGGAGGAGGACGCGCTGCTGAGCCAATTGGTGGCGCAGTTCGGGGCGCGGAACTGGAGCATGATCGCGCGGGGAGTGCCGGGACGCTCCGGCAAGTCGTGCCGGCTCCGGTGGTGTAATCAGCTGGACCCTTACGTGAAACGCAAGCCCTTCACTGAGGAAGAGGATAGGATCATAGTTTCAGCCCATGCAATCCATGGAAACAAATGGGCAGCAATTGCTAGGCTTCTTCCAGGTAGAACAGATAATGCTATCAAGAATCACTGGAATTCTACACTGAAGCGCAGGTGTATGGAAGTGGGAAGATACATCCCAGCGCATCCTGAAGTGATCGAAGATGGTACCTTTGAAAAAACAAAAGCATCCTCTGAAGAAACCATGTCAATTGGGGATATCAATTCATTGAATCCTGCAGAAGTCAGAAATGCTATGATGGATAATGAAAATAAACCTCCAACAAAAGATGATGCTAAAGTGGAGGAACATCCAACACTTTATCGACCAGTAGCACGTGTTAGTGCATTTAATGTTTATAATCCTCCAGGCAGGCCAACAACTGGATCATGTTCAAAGATGCTCCCATGGCAGAGCCCTTTGATCCAATCCCCCAAACCAGACGTAGGATCCTGCAAGTTATTTGATGATACTGATTTTGAGCCCATGGTTCCATCGCAATGTGGTCATGGCTGCTGCACAGGAGACTCGAGGGAAAGCCATTTGCATGGTTCACTTCTAGGTCCCGAGTTTGTTGACTACTTGGACTCACCTTCTTTGACTAGTCATGCATTGGTTTCAATAGCAACAGACTTGAACAATATAGCTTGGATCAAGAGTGGCCTTGAGAATTGTGGCACTGGAGTAACCACTGAGAATACTGCAAACTTGACAGTATCTCAAGGAATTGCCACTGCTTCACAAGCAAACTTCTTACAAGAGGTGTTATCATCAACAAACATGGCTATTGGCTAG 1113 0.496 MTEEDRSAEETVRYGVAATELGGEEVDLADVTEVGEGSVARRVRGPWSPEEDALLSQLVAQFGARNWSMIARGVPGRSGKSCRLRWCNQLDPYVKRKPFTEEEDRIIVSAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLKRRCMEVGRYIPAHPEVIEDGTFEKTKASSEETMSIGDINSLNPAEVRNAMMDNENKPPTKDDAKVEEHPTLYRPVARVSAFNVYNPPGRPTTGSCSKMLPWQSPLIQSPKPDVGSCKLFDDTDFEPMVPSQCGHGCCTGDSRESHLHGSLLGPEFVDYLDSPSLTSHALVSIATDLNNIAWIKSGLENCGTGVTTENTANLTVSQGIATASQANFLQEVLSSTNMAIG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2118 370 Gene3D - 43 95 - -
Aed3g2118 370 CDD SANT 46 88 IPR001005 -
Aed3g2118 370 Gene3D - 98 144 - -
Aed3g2118 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Aed3g2118 370 PANTHER MYB TRANSCRIPTION FACTOR-LIKE PROTEIN 19 331 - -
Aed3g2118 370 PANTHER MYB PROTEIN-RELATED 19 331 - -
Aed3g2118 370 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Aed3g2118 370 SMART sant 43 92 IPR001005 -
Aed3g2118 370 SMART sant 95 143 IPR001005 -
Aed3g2118 370 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 41 90 IPR017930 -
Aed3g2118 370 ProSiteProfiles Myb-like domain profile. 39 90 IPR001005 -
Aed3g2118 370 SUPERFAMILY Homeodomain-like 41 137 IPR009057 -
Aed3g2118 370 CDD SANT 98 141 IPR001005 -
Aed3g2118 370 Pfam Myb-like DNA-binding domain 44 90 IPR001005 -
Aed3g2118 370 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2118 Aed-Chr3 25038715 25041606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2118 39 330 MYB Transcription Factor Family AT3G55730 48.297 1.45e-97 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aed3g2118 Myb_DNA-binding 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2118 K09422 - gmx:100781228 625.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2118 3 25038715 25041606 Aed2g1252 2 11148569 11153612 ECH
Aed3g2118 3 25038715 25041606 Aed3g2118 3 25038715 25041606 ECH