Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2117 ATGTTGGTTACTGAGGACAAGTCTCATGTTGTTGTTGTTGCTATAGACAATACTACCAATACTACCGATGAGGAGCAAAGAAGGTCCTCCCATGATGATTCTGGCACTGAGATTGTGGGAGTAGTGTGTGAGAAGGAGAGAGGAACGGGATCCTCTGCTGCATCAGAGTGTTCAGTGGAGGTGGTGGATCTGGAGGAGGAAGGTGCAGTTGCTGAGGTTAAGGTGCATTTGGCCAATGTGGAGAGGGATTGTAGGATTTGTCATCTCAGCATGGATATGACCAATCATGAATCTGGAACTCCCATTGAGCTGGGGTGTTCTTGCAAGGATGATTTGGCTGCTGCTCACAAACAGTGTGCTGAGGCTTGGTTCAAGATCAAGGGAAACAAAACTTGTGAAATATGTGGATCGATTGCACGCAACGTAGCTGGAGCTATTGAAATTCAAATGACAGAACAGTGGAATGAGGCAAATGATGCTTCCACGGCACCACCATCTGGACCGGCACCACCCGCGGAAACTCGAAACTTCTGGCAGGGTCACCGGTTTTTGAATTTCCTGCTAGCCTGTATGGTCTTTGCATTTGTCATATCCTGGCTTTTTCACTTTAATGTGCCCTCTTGA 624 0.4728 MLVTEDKSHVVVVAIDNTTNTTDEEQRRSSHDDSGTEIVGVVCEKERGTGSSAASECSVEVVDLEEEGAVAEVKVHLANVERDCRICHLSMDMTNHESGTPIELGCSCKDDLAAAHKQCAEAWFKIKGNKTCEICGSIARNVAGAIEIQMTEQWNEANDASTAPPSGPAPPAETRNFWQGHRFLNFLLACMVFAFVISWLFHFNVPS 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2117 207 MobiDBLite consensus disorder prediction 21 35 - -
Aed3g2117 207 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 13 207 - -
Aed3g2117 207 CDD RING_CH-C4HC3_MARCH 84 136 - -
Aed3g2117 207 PANTHER ZINC FINGER, RING-CH-TYPE 13 207 - -
Aed3g2117 207 MobiDBLite consensus disorder prediction 15 35 - -
Aed3g2117 207 Pfam RING-variant domain 84 135 IPR011016 GO:0008270
Aed3g2117 207 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 144 IPR013083 -
Aed3g2117 207 SUPERFAMILY RING/U-box 81 138 - -
Aed3g2117 207 ProSiteProfiles Zinc finger RING-CH-type profile. 76 142 IPR011016 GO:0008270
Aed3g2117 207 SMART ringv_2 83 136 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2117 Aed-Chr3 25034009 25037139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2117 23 207 C3H Transcription Factor Family AT5G05830 63.102 6.95e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2117 - - gmx:100818979 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2117 3 25034009 25037139 Aed2g1253 2 11179472 11182652 ECH
Aed9g1939 9 22782526 22785919 Aed3g2117 3 25034009 25037139 ECH
Aed2g1253 2 11179472 11182652 Aed3g2117 3 25034009 25037139 ECH
Aed3g2117 3 25034009 25037139 Aed3g2117 3 25034009 25037139 ECH