LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aed3g2112	ATGACAGCAGAAATGGACAGTGTTGTCTCTGTTTTCCCAAATAGGAAGAGTCATCTGCACACAACTAGATCTTGGGACTTCTTAGGCGTTTCGCACCAACTCCAAAGAACAAGTTTAGAAAGTGACATAGTTGTTGGAGTAATAGACACAGGAATTTGGCCAGAGTCTAAGAGCTTCACTGACAAAGGATTTGGTCCTCCACCAACCAAATGGAAGGGATCATGCCAAAACTTTACCTGTAACAACAAAATAATAGGTGCAAAATACTTCAATATCGAAGGTGTCTATGCCAAAGACGATATCAAATCTCCTAGAGATACAGATGGCCATGGGTCACACACTGCATCAACAGTTGCTGGAAACTTGGTTAAGTCAGCAAGTCTACTAGGGTTTGGGTCAGGGACAGCCCGTGGAGGAGTTCCATCAGCACGAATTGCTATATACAAAGCATGTTGGAAAATAGGTTGTCTTGAGGGTGACGTTCTTGCAGCATTTGATGAAGCAATTGCTGATGGAGTTGACATCATTTCTGTTTCAGCTGGACTATCAAGCTCAGATGACCTTACTCAGTATTTCCAAAATTCATATAGCATAGGAAGTTTCCATGCAATGAAAAGAGGTATATTAACGTCCAATTCTGCCGCTAATTGGAGTCCAGGATTTTCCACCCTGACCATTTATCCACCGTGGATACTCTCTGTGGCTGCTAGCACTATTGCCAGAAAAGATGTACCCAACATTACCGATGGATACAACAGTTCCATATCCAGGTATCAGAACATGAATCCATGCATACGTGATATTTCCTTGTTTATAAAAAAGAAATTTGGATTTGAATATCTTATATATATTTTACTGCTCAGGCTTTGCTACGATAACTCGGTAGATAAACATTTGGTGAAAGGAAAAATTGTTTTGTGTGACGGGTTCGCGTCTATCGAAGATGTTGGGGTTTTGTCTGGGGCAGCTGGGATGCTTCTTGGAGCCCCTGCTCCAAAAGATATGCCATGGACATTTGCACTACCCGCAGCATTCCTTAGTCGAAATACCATTAAGTTCATATATTCTTACATGATTTCATCGAGAAATTCAACAGCCACGATATTTAGGAGTGACGAAAACAATGATTCACTAGCCCCTTACATAGTTTCATTTTCATCAAGAGGTCCAAATCCAATTACACCGAACACTCTCAAGCCTGACCTCGCTGCCCCAGGAGTTAACATTATAGCTGCATGGTCTCCAATCTCTCCAATTTCAGATTTTAAGGGTGACAAAAGACAAGAACAATACAACATAATATCTGGCACTTCAATGGCTTGTCCTCATGCATCTGCAGCAGCTGCATATGTCAAATCATTTCACCCTAATTGGTCTCCTGCTATTATCAAGTCTGCATTAATGACCACTGTTGCAAGAAACACGCTAAAAAGGAAGCTTCATGTTTTCCATAGAACGGTTATGAATGTGGGATCAGTAACGTCTAGTTATAAAGCCAAAGTGGTAGCTACATCTTTGTTGGATATTCAAGTAAAACCAGATGTTCTGTCCTTCACATCAATTGGGCAGAATAAGTCATTCTCGGTCATAATTGAAGGGACTATTAACGCGGATATACTCTCTGCTTCTCTGTTTCCTGAAATTCCTTCTTCTCACGATACTTAA	1665	0.409	MTAEMDSVVSVFPNRKSHLHTTRSWDFLGVSHQLQRTSLESDIVVGVIDTGIWPESKSFTDKGFGPPPTKWKGSCQNFTCNNKIIGAKYFNIEGVYAKDDIKSPRDTDGHGSHTASTVAGNLVKSASLLGFGSGTARGGVPSARIAIYKACWKIGCLEGDVLAAFDEAIADGVDIISVSAGLSSSDDLTQYFQNSYSIGSFHAMKRGILTSNSAANWSPGFSTLTIYPPWILSVAASTIARKDVPNITDGYNSSISRYQNMNPCIRDISLFIKKKFGFEYLIYILLLRLCYDNSVDKHLVKGKIVLCDGFASIEDVGVLSGAAGMLLGAPAPKDMPWTFALPAAFLSRNTIKFIYSYMISSRNSTATIFRSDENNDSLAPYIVSFSSRGPNPITPNTLKPDLAAPGVNIIAAWSPISPISDFKGDKRQEQYNIISGTSMACPHASAAAAYVKSFHPNWSPAIIKSALMTTVARNTLKRKLHVFHRTVMNVGSVTSSYKAKVVATSLLDIQVKPDVLSFTSIGQNKSFSVIIEGTINADILSASLFPEIPSSHDT	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aed3g2112	554	ProSitePatterns	Serine proteases, subtilase family, serine active site.	436	446	IPR023828	-
	Aed3g2112	554	Gene3D	Peptidase S8/S53 domain	42	475	IPR036852	GO:0004252\|GO:0006508
	Aed3g2112	554	Gene3D	-	240	375	-	-
	Aed3g2112	554	ProSiteProfiles	Serine proteases, subtilase domain profile.	24	494	-	-
	Aed3g2112	554	PANTHER	CUCUMISIN-LIKE	5	474	-	-
	Aed3g2112	554	CDD	PA_subtilisin_like	290	368	-	-
	Aed3g2112	554	Pfam	Subtilase family	41	474	IPR000209	GO:0006508\|GO:0008236
	Aed3g2112	554	Pfam	Fibronectin type-III domain	472	535	IPR041469	-
	Aed3g2112	554	PRINTS	Subtilisin serine protease family (S8) signature	106	119	IPR015500	-
	Aed3g2112	554	PRINTS	Subtilisin serine protease family (S8) signature	40	59	IPR015500	-
	Aed3g2112	554	PRINTS	Subtilisin serine protease family (S8) signature	435	451	IPR015500	-
	Aed3g2112	554	CDD	Peptidases_S8_3	18	470	IPR034197	-
	Aed3g2112	554	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	5	474	IPR045051	-
	Aed3g2112	554	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	482	539	IPR045051	-
	Aed3g2112	554	PANTHER	CUCUMISIN-LIKE	482	539	-	-
	Aed3g2112	554	SUPERFAMILY	Subtilisin-like	19	480	IPR036852	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aed3g2112	Aed-Chr3	24984992	24989910	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aed3g2112	5	478	Subtilisin-like Serine Gene Family	AT5G59190	46.559	7.83e-137	411

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aed3g2112	-		-	gmx:100815516	577.4