Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2106 ATGGCTCCTTCTTCAGATGTTAACCATCTTTCACATCCTTGCATCTATGCAGGGGATTATAGTTCTTCTTCTCGCTCAGAGAGAAAGTCTGGTTTCATGAAATGGCTTAGTAAGCTTTTCAGAGGTGGGTCCCATAGAGGAAGGGGTGGTCGTCGTCTGCATGAGCCAACAGATGAAAGCATAATTTGGGGCGCTCCATCTAGAGCGTTGGATGATCGTGCTAGAGCTCAGAAGGAGAAAGAAGATCTAGGCCATGCAATGGCTCTTTCTTCAGCCGAAGATTTAAAGCGACCAAACGCTCATCAAGGATATAACTGGGGAGAAGACACTGGTGATGATTACTCAAAGGCACCACACGATACCCTTAACTCATCTGCACACCCTCCATTTGCCCCTACAGCATTTTATCCACACGAATATAGAAGAATATGTGGTGGCTGCAACCAAGAGATAATGTATGGAAATTGTTTGAGCTGCATGGATACTTATTTTCACCCAAATTGTTTTCGCTGTCACTCTTGCGGTTACCCCATTACAGAGCGTGAGTTTTCCTTGTCAGGGAAGCATCCATATCACAAGTCCTGTTTTAAAGAGTTGTCTCACCCAAAATGTGAAGTTTGCTTCCAATTTATTCCTATAAATGCTGCTGGTTTGATTGAGTATAGATGCCACCCCTTTTGGTCCCAAAAGTATTGTCCATCTCATGAATATGATAATACATCTCGCTGTTGTAGTTGTGAAAGATTGGAGCCTTTGAGCATAAAATACTATAGACTAGAAGATGGACGGAGTTTGTGTTTAGAGTGCATGGAATCTGCCATAATGGATACTGGTGACTGCCAGCCCCTTTACCATTCTATCAGAGATTACTATGAAGGAATGCAGATGAGAATTGATCAACAAATTCCCATGCTTCTAGTTGAGAGAGAAGCACTTAATGAAGCTATTGTAGGGGAGAAAAATGGTTTTCATCACTTACCTGAAACAAGAGGCTTATGCCTTTCAGAAGAGCAGACCGTCACCAGTATACATAGAAGACCAAGAATTGGAGGCCATCGACTAATAGGGATGAGAACTCAACCTCAAAAACTGACTAGAAAATGTGAAGTTACAGCAATTCTTGTTCTATATGGTCTTCCTAGGTTACTAACAGGTGCTATACTTGCCCATGAGTTGATGCATGGATGGCTACGCCTTAATGGTAGTTATCGTAACCTTAATCCTGAAGTAGAGGAAGGTATTTGTCAGGTTCTTTCGCATATGTGGCTTGAGTCAGAAGTAATGCCAAGCTTTCAAAGCATGCCATCAACATCCACAGGTTCTGCTTCCTCCTCCTCAAAGAAGGGTGCAAAGTCTCATGTTGAAAATAAATTGGGTGAGTTTTTCAAGAATCAGATTGCCAATGATTCTTCCCCAGCTTATGGTGGTGGCTTTAGAGCTGCTAATGAAGCTGTTAACAAATATGGTTTGCGTAGAACACTTGACCATATTCATTTGACTGGTCTTTTTCCAGTGTAA 1518 0.4203 MAPSSDVNHLSHPCIYAGDYSSSSRSERKSGFMKWLSKLFRGGSHRGRGGRRLHEPTDESIIWGAPSRALDDRARAQKEKEDLGHAMALSSAEDLKRPNAHQGYNWGEDTGDDYSKAPHDTLNSSAHPPFAPTAFYPHEYRRICGGCNQEIMYGNCLSCMDTYFHPNCFRCHSCGYPITEREFSLSGKHPYHKSCFKELSHPKCEVCFQFIPINAAGLIEYRCHPFWSQKYCPSHEYDNTSRCCSCERLEPLSIKYYRLEDGRSLCLECMESAIMDTGDCQPLYHSIRDYYEGMQMRIDQQIPMLLVEREALNEAIVGEKNGFHHLPETRGLCLSEEQTVTSIHRRPRIGGHRLIGMRTQPQKLTRKCEVTAILVLYGLPRLLTGAILAHELMHGWLRLNGSYRNLNPEVEEGICQVLSHMWLESEVMPSFQSMPSTSTGSASSSSKKGAKSHVENKLGEFFKNQIANDSSPAYGGGFRAANEAVNKYGLRRTLDHIHLTGLFPV 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2106 505 Gene3D Cysteine Rich Protein 139 203 - -
Aed3g2106 505 ProSiteProfiles LIM domain profile. 142 202 IPR001781 -
Aed3g2106 505 SMART lim_4 143 195 IPR001781 -
Aed3g2106 505 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 139 169 - -
Aed3g2106 505 Pfam Protein DA1 293 499 IPR022087 -
Aed3g2106 505 CDD LIM_DA1 144 196 - -
Aed3g2106 505 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 22 505 - -
Aed3g2106 505 ProSitePatterns LIM zinc-binding domain signature. 144 178 IPR001781 -
Aed3g2106 505 Pfam LIM domain 144 197 IPR001781 -
Aed3g2106 505 PANTHER PROTEIN DA1-RELATED 2 22 505 IPR045218 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2106 Aed-Chr3 24947706 24951911 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aed3g2106 DA1-like 3.9e-98 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2106 - - gmx:100784976 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2106 3 24947706 24951911 Aed3g2106 3 24947706 24951911 ECH
Aed7g2116 7 23719371 23724480 Aed3g2106 3 24947706 24951911 PCT