Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2092 ATGTCTGGGATTTGCTGTGGCGTTGTTGGTGATGCAAGAGAAACTTCTTCCTCCATCGAACCTACTACCTCACGCCCTTCTTCCACTCGCCGGAGTTTGGACCTTCTTCCTTTGAAATACATAGCTTCTGATGTGTCAATCCCGGCGCCGGAAAATTCCCGGAAGCGTCAGAAGCTAGATCAGCCGGCAAGGAAGTGTGAAAACGCGGTTCAGAGTTCCGAATCCAAGGTAGTTGAGGAGTGTCCGAGGTATGGGGTAACCTCGGTCTGTGGAAGGAGGAGGGACATGGAAGACGCTGTTTCGGTGCGTCCATCGTTTTGCAAAGATAATGAAAATTGCTCTCAAGGCTTTCATTTCTTCGCTGTTTTCGACGGCCACGGATGCTCACATGTGGCGACGATGTGCAAGGAGAGGTTACACGAGATAGTGAAAGAAGAGGTTCACAAAGCGAAGGAAAATTTGGAATGGGAATCAACGATGAAGAAGTGTTTCGCGCGCATGGACGAAGAGGTGCAAAGGTGGAGCCACAACAACGAGGCTCCAACTTGCAGGTGCGAGCTTCAAACTCCGCACTGCGACGCCGTTGGCTCCACCGCGGTCGTCGCCGTCGTCACTCTGGATAAAATCATCGTCGCTAACTGCGGTGACTCACGCGCCGTGCTTTGCCGCAACAACGTGGCTGTCCCACTCTCCGACGATCATAAGCCGGACCGACCCGACGAGTTGCTTCGGATCCAAGCCGCGGGAGGGCGCGTGATATATTGGGACGGGCCTAGAGTGCTTGGGGTGTTGGCTATGTCCAGAGCAATAGGGGACAATTATCTGAAGCCATATGTAATTTCGGAACCGGAGGTAACGGTAACGGAGCGGAGTGACGAGGATGAGTGTTTGATACTAGGGAGTGATGGGCTTTGGGATACGGTGCAAAACGACACCGCATGCAAGGTGGTGCGGATGTGTCTGAAGGCGCAGAAGGCGGCGTCTCCGGGGAGGGAGTTGGCGGTGGACTGTTCCGACAAGGCGTGCTCCGACGCCTCCATTCTGCTGACCAAATTGGCGTTGGTGAGGCAAAGTTCCGACAATGTGAGCGTGGTGGTGGTTGATTTGAGGAGAGATCAATCAACAAAAAGGAATTAA 1137 0.5347 MSGICCGVVGDARETSSSIEPTTSRPSSTRRSLDLLPLKYIASDVSIPAPENSRKRQKLDQPARKCENAVQSSESKVVEECPRYGVTSVCGRRRDMEDAVSVRPSFCKDNENCSQGFHFFAVFDGHGCSHVATMCKERLHEIVKEEVHKAKENLEWESTMKKCFARMDEEVQRWSHNNEAPTCRCELQTPHCDAVGSTAVVAVVTLDKIIVANCGDSRAVLCRNNVAVPLSDDHKPDRPDELLRIQAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERSDEDECLILGSDGLWDTVQNDTACKVVRMCLKAQKAASPGRELAVDCSDKACSDASILLTKLALVRQSSDNVSVVVVDLRRDQSTKRN 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2092 378 CDD PP2Cc 83 344 IPR001932 -
Aed3g2092 378 Gene3D - 77 377 IPR036457 -
Aed3g2092 378 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 77 374 - -
Aed3g2092 378 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 26 80 - -
Aed3g2092 378 PANTHER ALPHABET, ISOFORM E-RELATED 77 374 - -
Aed3g2092 378 PANTHER ALPHABET, ISOFORM E-RELATED 26 80 - -
Aed3g2092 378 SMART PP2C_SIG_2 95 369 IPR001932 -
Aed3g2092 378 SMART PP2C_4 71 367 IPR001932 -
Aed3g2092 378 MobiDBLite consensus disorder prediction 15 31 - -
Aed3g2092 378 SUPERFAMILY PP2C-like 81 370 IPR036457 -
Aed3g2092 378 Pfam Protein phosphatase 2C 83 342 IPR001932 -
Aed3g2092 378 MobiDBLite consensus disorder prediction 9 31 - -
Aed3g2092 378 ProSiteProfiles PPM-type phosphatase domain profile. 83 369 IPR001932 -
Aed3g2092 378 ProSitePatterns PPM-type phosphatase domain signature. 119 127 IPR000222 GO:0043169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2092 Aed-Chr3 24854638 24856750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2092 82 371 PP2C-type Phosphatase Gene Family AT1G07430 63.208 1.52e-138 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2092 K14497 - gmx:100807302 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2092 3 24854638 24856750 Aed3g2092 3 24854638 24856750 ECH
Aed7g2128 7 23814445 23816701 Aed3g2092 3 24854638 24856750 PCT