Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2088 ATGGCGAATCGTTGGTGGGCCGGGAACGTGGATGTGAGGTCCAATGAAGTCCTTCACCAGCATGACAACGGTGACAGCAACAACGCCACTCCGACCAACAGTGGGAACAGTAACACCAACTTTAACAACGCGCTTGTCGAGGACGACGCCAACACCAACGACCGCGACGGAGACGACCAGAGCCTCAGCGGGAGTCGGAGGCCACGTGGCAGGCCGCCGGGTTCGAAGAACAAGCCGAAGCCGCCGGTGGTGATTACTAAGGAGAGCCCCAACGCGCTCCGCAGCCACATCCTCGAAATCAGCGGCGGCAGCGACGTCGCGGACTGCATTGCCACCTTCGCCACGCGTCGCCACCGCGGCGTGTCTGTCCTCAGCGGCAGCGGCATCGTCACCAACGTCACTCTCCGGCAGCCCGCGGCACCGGGCGGGGTCATCACTCTCCAGGGGAGGTTCGAGATTCTCTCCCTCTCTGGCGCGTTTCTGCCGGCGCCGTCTCCACCAGAGGCCACCGGGCTGACCGTCTACCTCGCCGGCGGGCAGGGGCAGGTCGTCGGAGGAAGCGTGGTGGGGCCCCTCGTCGCCTCGGGAGCTGTGATGGTCGTCGCTGCTACTTTCGCCAATGCTACCTATGAAAGATTGCCTTTGGAGGATGAACAAGGTGAAGAGGACATGCAAGAGGTGAATGAAGGTGGTGATGCTGAAACAACACCGCCGCCGCAGCCACCTTCACAAGGTGAACAGGTTCCAATGCCGGTGTATAATTTGGTGCCTAGTAATAGTGATGTGTTTTGGGGGCCTCCACCAGCTCGCCCTCCGCCCCCACCTTCTAATTATTGA 837 0.6141 MANRWWAGNVDVRSNEVLHQHDNGDSNNATPTNSGNSNTNFNNALVEDDANTNDRDGDDQSLSGSRRPRGRPPGSKNKPKPPVVITKESPNALRSHILEISGGSDVADCIATFATRRHRGVSVLSGSGIVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGSVVGPLVASGAVMVVAATFANATYERLPLEDEQGEEDMQEVNEGGDAETTPPPQPPSQGEQVPMPVYNLVPSNSDVFWGPPPARPPPPPSNY 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2088 278 MobiDBLite consensus disorder prediction 212 278 - -
Aed3g2088 278 MobiDBLite consensus disorder prediction 19 90 - -
Aed3g2088 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 17 278 - -
Aed3g2088 278 SUPERFAMILY AF0104/ALDC/Ptd012-like 90 218 - -
Aed3g2088 278 MobiDBLite consensus disorder prediction 264 278 - -
Aed3g2088 278 Gene3D - 93 226 - -
Aed3g2088 278 ProSiteProfiles PPC domain profile profile. 90 228 IPR005175 -
Aed3g2088 278 MobiDBLite consensus disorder prediction 49 65 - -
Aed3g2088 278 Pfam Plants and Prokaryotes Conserved (PCC) domain 94 206 IPR005175 -
Aed3g2088 278 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 17 278 IPR014476 GO:0003680
Aed3g2088 278 MobiDBLite consensus disorder prediction 21 48 - -
Aed3g2088 278 CDD DUF296 94 177 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2088 Aed-Chr3 24800555 24801391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2088 1 257 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 55.185 7.74e-76 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2088 - - gmx:100787100 361.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2088 3 24800555 24801391 Aed3g2088 3 24800555 24801391 ECH