Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2087 ATGACAGGGCTTGGCTCATCATGTGGAGCATGCAAGTTCCTAAGGAGAAAATGTACCAGTGATTGTGTATTTGCTCCTTACTTTTCCTACGACCAAGCTTCAACACATTTTGCAGCAGTTCATAAGATTTATGGTGCTAGCAATGTCTCCAAGCTACTGTCACATCTTCCAATCCAGAATAGAAGTGATGCTGCCATCACCATATCTTATGAAGCCTTGGCTCGCATGCAGGATCCTATATATGGCTGTGTTGCTCATATCTATGCATTGCAGCATCAGGTTGCCAGCTTGCAAGAGGAGATAGATGTTCTTGGAAGTCTAATGGCAAATTCCACATGTAGTAGTGTTGTCAGTTGTGGCAGTGTCCAAGCACCAATGAACTCAAACAACAACGGAATACAGTATAATATTTTGCAGCATGATGCTACAAGGACACAGTATTGTCAAAATTATCTAACTAATTTTCTTTCACAAGAAGGAAGTGCCACTAATTTCTTCCAAAGTCTGAACTCACAGATGGATATAGAGCTTCCTAATACACACGTGGATCAAGAACCTTCATTTGGTGATTCTTCCAACTCCAATCCGTTAGAACAGTTCCTATCTGGAATTGACCAAGAGGTCTTCGTGAATCATCCATGGTTCAAGCATAACGCAGACATAAAGAACTAG 672 0.4122 MTGLGSSCGACKFLRRKCTSDCVFAPYFSYDQASTHFAAVHKIYGASNVSKLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQHQVASLQEEIDVLGSLMANSTCSSVVSCGSVQAPMNSNNNGIQYNILQHDATRTQYCQNYLTNFLSQEGSATNFFQSLNSQMDIELPNTHVDQEPSFGDSSNSNPLEQFLSGIDQEVFVNHPWFKHNADIKN 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2087 223 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Aed3g2087 223 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Aed3g2087 223 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 221 - -
Aed3g2087 223 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2087 Aed-Chr3 24793831 24794784 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2087 1 110 AS2 family AT5G06080 73.636 6.48e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aed3g2087 LOB 6.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2087 K13945 - gmx:100787638 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2087 3 24793831 24794784 Aed3g2087 3 24793831 24794784 ECH