Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2082 ATGTCTTCCCATTGGTGTCACCGGTGCAATAAATTTGTCAGAGCATGGAGACAAGAATTGCCTGTTTGTCCCGATTGCGATAGCGGATTCGTCGAAGAAGTCGATCCTAATACCAACCACTCTGTCCACGTCGAAACGCGACGCCGTAGGTTCCCATCGGCGGCCGCCATGTACATGATCGGCCACCGTTCCGGTAACTCCGATCAAAGCCCCCGTCCCTCTCGCCGGCAGCAATGCCGGACCGTTAGCGGTGACCGGTCACCGATCAACCCGGTCATCATGCTCCAGAGCGAGGGGACAAGCCGCGACCAAGGCTCCGGCTTCGACCTTTTCTTCGACGACGGCGCCGGTTCGGGTATCCGACCACTCCCTCCGAGAATGTCGGAGTTTCTCCTAGGAACAGGCTTCGACCGCGTGATGGACCAGCTTTCCCACGTGGAATCAAACTCCAGCGCGGGGAGGCACGACCAGCCGAGCCACGCGTCGGCGTCAAAATCCGCCGTGGAGTCCCTCCCGGCGATTGAGATAAACACGAGGCACATGGAGATCGAGTCGCACTGTGCGGTTTGCAAGGAGCCATTCGAACTTTGCACCATGGCAAAGGAAATGCCATGCAAACACATATACCACGCGGAATGCATCCTGCCGTGGCTGGCGATGAGAAACTCGTGCCCCGTGTGCCGGCACGAGTTGCCGTGCGAGGACGCACGTGCGAGACTGGAGCGCGTGGAGGAGGAGGAAGAGAACAACGTGGGATTAACAATTTGGCGGTTACCCGGTGGTGGTTTTGCTTTGGGGAGATTCGGAAGAAGAGAGGGTGAGAGAGAGGTTAACGTGCCTCTGGTGTACACGGAAGTGGACGGTGGGTTTAACTTGAACAACGTTGTTGTGGGTGAACCGAGGAGGGTGTCGTGGTCGGTTTCGGAGTCTAGAGGGAGGGGAAGAGGTGGAGCGTTCAGGAGAATGTTTAACGGTTTGTTTAGTTGCTTGAGAGGTGGTGGGGTTGGGCCTCAGCGTTCTTCTTCTGCTTACACCACTACCACAACCGTCACCACGAGTAACAGTTTTAGGGCTTCTTCTCGCCCTAACTTGGCTCTCACTCCACCTTCTTCTCGTAGGACTTGGTCTATGGATGTCAACGGTGGAACCAGACCATGGTAA 1161 0.565 MSSHWCHRCNKFVRAWRQELPVCPDCDSGFVEEVDPNTNHSVHVETRRRRFPSAAAMYMIGHRSGNSDQSPRPSRRQQCRTVSGDRSPINPVIMLQSEGTSRDQGSGFDLFFDDGAGSGIRPLPPRMSEFLLGTGFDRVMDQLSHVESNSSAGRHDQPSHASASKSAVESLPAIEINTRHMEIESHCAVCKEPFELCTMAKEMPCKHIYHAECILPWLAMRNSCPVCRHELPCEDARARLERVEEEEENNVGLTIWRLPGGGFALGRFGRREGEREVNVPLVYTEVDGGFNLNNVVVGEPRRVSWSVSESRGRGRGGAFRRMFNGLFSCLRGGGVGPQRSSSAYTTTTTVTTSNSFRASSRPNLALTPPSSRRTWSMDVNGGTRPW 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2082 386 MobiDBLite consensus disorder prediction 146 168 - -
Aed3g2082 386 MobiDBLite consensus disorder prediction 336 386 - -
Aed3g2082 386 Pfam Protein of unknown function (DUF1117) 251 354 IPR010543 -
Aed3g2082 386 MobiDBLite consensus disorder prediction 146 166 - -
Aed3g2082 386 SMART ring_2 187 227 IPR001841 -
Aed3g2082 386 CDD RING-H2_RNF181 187 231 - -
Aed3g2082 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 329 - -
Aed3g2082 386 MobiDBLite consensus disorder prediction 338 378 - -
Aed3g2082 386 SUPERFAMILY RING/U-box 168 233 - -
Aed3g2082 386 MobiDBLite consensus disorder prediction 62 91 - -
Aed3g2082 386 ProSiteProfiles Zinc finger RING-type profile. 187 228 IPR001841 -
Aed3g2082 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 234 IPR013083 -
Aed3g2082 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 329 - -
Aed3g2082 386 Pfam zinc-ribbon 3 33 IPR039525 GO:0061630
Aed3g2082 386 Pfam Ring finger domain 186 228 IPR001841 -
Aed3g2082 386 MobiDBLite consensus disorder prediction 63 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2082 Aed-Chr3 24772332 24773492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aed3g2082 122 235 C3H Transcription Factor Family AT5G01980 42.982 7.37e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2082 - K11982 gmx:100789228 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aed3g2082 3 24772332 24773492 Aed3g2082 3 24772332 24773492 ECH