Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aed3g2080 ATGGATTATGCTCGGGACGGGAACGTGGTGCAAATAATCACCGGCGGAGGCGGAGATAGCTGGTCCGGCGGCGACCAAGCCGATTGGGCGACGGAGGACGAGTACCGGTTTTGGAACAACAGCAACAACAACGGGGACTCAGAAACGACGCCGTCGAACTCGAATTACGAGGCGCGGTCGGAGCCTCCGAACAAGAAGTCGCGGAATTCCTCGCAGGAGGGGAGCTCGAACCGATCAAAGGCGATCGGGAAGATGTTCTTCAAGACGAAACTGTGCTGCAAGTTCAGGGCGGGGACCTGCCCTTACATCACCAACTGCAATTTCGCCCACAGCATCGAGGAACTGCGGCGCCCACCACCGAATTGGCAGGAGATTGTGGCCGCGCACGAGGAGGAGAAGGCGGTGATGACGACAGAGCCGAGGGAGGAGTTTCAGATTCCCACTGTGGGGTCTTCCACCTTTGCCGGGGATATGATGCAGAGGTCCTACAAGGGAAGGCACTGTAAGAAGTTTTACACCGAGGAAGGGTGCCCCTATGGGGATAGTTGGTATTGCCCGTTTGGCAACAAATGTCATTTTGCTCATGGTGCCACAGAAAATAGAGATGCTGCTTCTACAATTGTTAGTGACACAAACAAGGGAGTGCCTTCAAAAACTTCTGCTGATAACGTGGTTGCAGCGGCTACTCCTGTTGCTCATTCTGATGTGTATCATATTGGAGTTGCTTCACAAAGGCCTTCTTCCATGGTGATTCAGAGGCCAGGACAGAGAACACATCAGAAGTGGAAAGGTCCAGATAAAATCAGTAGGATATATGGTGATTGGATTGATGACATCGAATAG 843 0.5267 MDYARDGNVVQIITGGGGDSWSGGDQADWATEDEYRFWNNSNNNGDSETTPSNSNYEARSEPPNKKSRNSSQEGSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEEKAVMTTEPREEFQIPTVGSSTFAGDMMQRSYKGRHCKKFYTEEGCPYGDSWYCPFGNKCHFAHGATENRDAASTIVSDTNKGVPSKTSADNVVAAATPVAHSDVYHIGVASQRPSSMVIQRPGQRTHQKWKGPDKISRIYGDWIDDIE 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aed3g2080 280 MobiDBLite consensus disorder prediction 1 78 - -
Aed3g2080 280 SUPERFAMILY CCCH zinc finger 84 117 IPR036855 GO:0046872
Aed3g2080 280 ProSiteProfiles Zinc finger C3H1-type profile. 86 113 IPR000571 GO:0046872
Aed3g2080 280 ProSiteProfiles Zinc finger C3H1-type profile. 162 198 IPR000571 GO:0046872
Aed3g2080 280 MobiDBLite consensus disorder prediction 35 60 - -
Aed3g2080 280 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 16 182 - -
Aed3g2080 280 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Aed3g2080 280 PANTHER CCCH ZINC FINGER/TIS11-RELATED 16 182 IPR045877 GO:0003729
Aed3g2080 280 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 184 277 - -
Aed3g2080 280 Gene3D - 81 117 - -
Aed3g2080 280 SMART c3hfinal6 162 197 IPR000571 GO:0046872
Aed3g2080 280 SMART c3hfinal6 86 112 IPR000571 GO:0046872
Aed3g2080 280 PANTHER CCCH ZINC FINGER/TIS11-RELATED 184 277 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aed3g2080 Aed-Chr3 24752552 24755014 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aed3g2080 zf-CCCH 1.5e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aed3g2080 - - mdm:103436911 340.502